View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11280A_low_358 (Length: 212)
Name: NF11280A_low_358
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_358 |
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Alignment Details
Target: chr7 (Bit Score: 170; Significance: 2e-91; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 22 - 203
Target Start/End: Original strand, 35938794 - 35938975
Alignment:
| Q |
22 |
aggtgtaatctttgggatatagggaaaaataagcaaaacagtgcctcaagtaggatggtatttgatcatagcttaattttagtgcaggtaaaatatcatt |
121 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
35938794 |
aggtgtaatctttgggatatagggaaaaataagcaaaacagtgcctcaagtaggatggcatttgatcatagcttaattttagtgcaggtaaaatatcatt |
35938893 |
T |
|
| Q |
122 |
ttgcatctgttctaaattccatatctcagaatctcttataaattcccacttatttaaatcaaattttgaaaacagagaactt |
203 |
Q |
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|||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35938894 |
ttgcttctgttctaaattccatatctcagaatctcttacaaattcccacttatttaaatcaaattttgaaaacagagaactt |
35938975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 27 - 190
Target Start/End: Original strand, 32727039 - 32727202
Alignment:
| Q |
27 |
taatctttgggatatagggaaaaataagcaaaacagtgcctcaagtaggatggtatttgatcatagcttaattttagtgcaggtaaaatatcattttgca |
126 |
Q |
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|
|||||||||||||| |||||||| |||||||||| |||||||| |||||||| ||||||||||||||||| || | ||||||||||||||||| || | |
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| T |
32727039 |
taatctttgggataaagggaaaagaaagcaaaacattgcctcaaataggatggcatttgatcatagcttaacttcaatgcaggtaaaatatcatctttct |
32727138 |
T |
|
| Q |
127 |
tctgttctaaattccatatctcagaatctcttataaattcccacttatttaaatcaaattttga |
190 |
Q |
| |
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||||||||||||||||||||||||||||||| | |||| |||||||||||||||| ||||||| |
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| T |
32727139 |
tctgttctaaattccatatctcagaatctctcacaaatatccacttatttaaatcatattttga |
32727202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 30 - 203
Target Start/End: Original strand, 35981485 - 35981658
Alignment:
| Q |
30 |
tctttgggatatagggaaaaataagcaaaacagtgcctcaagtaggatggtatttgatcatagcttaattttagtgcaggtaaaatatcattttgcatct |
129 |
Q |
| |
|
||||||||||| |||||||| ||||||||||| |||||||| |||||||| ||||||||||| ||||| || || |||||||||||||||| || | ||| |
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| T |
35981485 |
tctttgggatagagggaaaagtaagcaaaacactgcctcaaataggatggcatttgatcataacttaacttcagggcaggtaaaatatcatctttcttct |
35981584 |
T |
|
| Q |
130 |
gttctaaattccatatctcagaatctcttataaattcccacttatttaaatcaaattttgaaaacagagaactt |
203 |
Q |
| |
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| |||| |||||||| ||||||||| |||| |||| |||||||||||||||||| ||||||||||| |||||| |
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| T |
35981585 |
gctctagattccataactcagaatcccttacaaatacccacttatttaaatcaagctttgaaaacagggaactt |
35981658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 30 - 203
Target Start/End: Original strand, 36002897 - 36003070
Alignment:
| Q |
30 |
tctttgggatatagggaaaaataagcaaaacagtgcctcaagtaggatggtatttgatcatagcttaattttagtgcaggtaaaatatcattttgcatct |
129 |
Q |
| |
|
||||||||||| |||||||| ||||||||||| |||||||| |||||||| ||||||||||| ||||| || || |||||||||||||||| || | ||| |
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| T |
36002897 |
tctttgggatagagggaaaagtaagcaaaacactgcctcaaataggatggcatttgatcataacttaacttcagggcaggtaaaatatcatctttcttct |
36002996 |
T |
|
| Q |
130 |
gttctaaattccatatctcagaatctcttataaattcccacttatttaaatcaaattttgaaaacagagaactt |
203 |
Q |
| |
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| |||| |||||||| ||||||||| |||| |||| |||||||||||||||||| ||||||||||| |||||| |
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| T |
36002997 |
gctctagattccataactcagaatcccttacaaatacccacttatttaaatcaagctttgaaaacagggaactt |
36003070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 27 - 203
Target Start/End: Complemental strand, 36222201 - 36222025
Alignment:
| Q |
27 |
taatctttgggatatagggaaaaataagcaaaacagtgcctcaagtaggatggtatttgatcatagcttaattttagtgcaggtaaaatatcattttgca |
126 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||| |||||||| |||||||| |||| ||||||||||||||||| |||||||||||||||| || | |
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| T |
36222201 |
taatctttgggatacaaggaaaaataagcaaaacaatgcctcaaataggatggcatttcatcatagcttaattttaatgcaggtaaaatatcacctttct |
36222102 |
T |
|
| Q |
127 |
tctgttctaaattccatatctcagaatctcttataaattcccacttatttaaatcaaattttgaaaacagagaactt |
203 |
Q |
| |
|
| |||||||| ||||| |||||| ||||||| ||| |||||||||||||||||||||||| |||||||||||| |
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| T |
36222101 |
tttgttctaagttccaaatctcatggtctcttacgaatatccacttatttaaatcaaattttgataacagagaactt |
36222025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 30 - 203
Target Start/End: Complemental strand, 36218207 - 36218034
Alignment:
| Q |
30 |
tctttgggatatagggaaaaataagcaaaacagtgcctcaagtaggatggtatttgatcatagcttaattttagtgcaggtaaaatatcattttgcatct |
129 |
Q |
| |
|
||||||||||| | ||||||| |||||||||| || |||| || ||||| |||||||||||||||||||||| |||||||||||||||| || | ||| |
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| T |
36218207 |
tctttgggatacaaggaaaaacaagcaaaacattgtctcagatatgatggcatttgatcatagcttaattttaaagcaggtaaaatatcatctttcttct |
36218108 |
T |
|
| Q |
130 |
gttctaaattccatatctcagaatctcttataaattcccacttatttaaatcaaattttgaaaacagagaactt |
203 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||| |||||||| ||||||||||||||| |||||||||||| |
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| T |
36218107 |
gttctaaattccatatctcatggtctcttacaaataaccacttatctaaatcaaattttgagaacagagaactt |
36218034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 27 - 203
Target Start/End: Original strand, 35957461 - 35957637
Alignment:
| Q |
27 |
taatctttgggatatagggaaaaataagcaaaacagtgcctcaagtaggatggtatttgatcatagcttaattttagtgcaggtaaaatatcattttgca |
126 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| || |||| || ||||| ||||||||||| ||||||||||| ||||||||||||||||| | |
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|
| T |
35957461 |
taatctttgggataaagggaaaaataagcaaaacattgtctcagatatgatggcatttgatcataacttaattttagcgcaggtaaaatatcattaatct |
35957560 |
T |
|
| Q |
127 |
tctgttctaaattccatatctcagaatctcttataaattcccacttatttaaatcaaattttgaaaacagagaactt |
203 |
Q |
| |
|
| |||||||||||||| |||||||| || || | ||||||||||||| ||| |||||| ||||| || ||||||||| |
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| T |
35957561 |
tttgttctaaattccacatctcagagtccctaacaaattcccacttacttatatcaaagtttgagaagagagaactt |
35957637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 27 - 203
Target Start/End: Original strand, 35976916 - 35977092
Alignment:
| Q |
27 |
taatctttgggatatagggaaaaataagcaaaacagtgcctcaagtaggatggtatttgatcatagcttaattttagtgcaggtaaaatatcattttgca |
126 |
Q |
| |
|
|||||||||||||| ||||||| |||| ||||||| || |||| || ||||| ||||||||||||||||||||||| |||||||||||| ||| || | |
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|
| T |
35976916 |
taatctttgggataaagggaaatataaacaaaacattgtctcatatatgatggcatttgatcatagcttaattttagcgcaggtaaaataccatctttct |
35977015 |
T |
|
| Q |
127 |
tctgttctaaattccatatctcagaatctcttataaattcccacttatttaaatcaaattttgaaaacagagaactt |
203 |
Q |
| |
|
| |||||||||||||| |||||||| || || | ||||||||||| ||| |||||| ||||| || ||||||||| |
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|
| T |
35977016 |
tttgttctaaattccacatctcagagtccctaacgaattcccacttgcttatatcaaagtttgagaagagagaactt |
35977092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 27 - 203
Target Start/End: Original strand, 35998328 - 35998504
Alignment:
| Q |
27 |
taatctttgggatatagggaaaaataagcaaaacagtgcctcaagtaggatggtatttgatcatagcttaattttagtgcaggtaaaatatcattttgca |
126 |
Q |
| |
|
|||||||||||||| ||||||| |||| ||||||| || |||| || ||||| ||||||||||||||||||||||| |||||||||||| ||| || | |
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| T |
35998328 |
taatctttgggataaagggaaatataaacaaaacattgtctcatatatgatggcatttgatcatagcttaattttagcgcaggtaaaataccatctttct |
35998427 |
T |
|
| Q |
127 |
tctgttctaaattccatatctcagaatctcttataaattcccacttatttaaatcaaattttgaaaacagagaactt |
203 |
Q |
| |
|
| |||||||||||||| |||||||| || || | ||||||||||| ||| |||||| ||||| || ||||||||| |
|
|
| T |
35998428 |
tttgttctaaattccacatctcagagtccctaacgaattcccacttgcttatatcaaagtttgagaagagagaactt |
35998504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 32 - 203
Target Start/End: Original strand, 35946258 - 35946429
Alignment:
| Q |
32 |
tttgggatatagggaaaaataagcaaaacagtgcctcaagtaggatggtatttgatcatagcttaattttagtgcaggtaaaatatcattttgcatctgt |
131 |
Q |
| |
|
||||||| | || ||||||||||||||||| || || | || ||||| ||||||||||| ||||||||||| |||||||| ||||||| || | | ||| |
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|
| T |
35946258 |
tttgggaaaaagagaaaaataagcaaaacattgtcttagatatgatggcatttgatcataacttaattttagcgcaggtaagatatcatctttcttttgt |
35946357 |
T |
|
| Q |
132 |
tctaaattccatatctcagaatctcttataaattcccacttatttaaatcaaattttgaaaacagagaactt |
203 |
Q |
| |
|
||||||||||| |||||||| || || | |||||||||||| ||| |||||| ||||| || ||||||||| |
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|
| T |
35946358 |
tctaaattccacatctcagagtccctaacgaattcccacttacttatatcaaagtttgagaagagagaactt |
35946429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 72 - 203
Target Start/End: Original strand, 35951937 - 35952068
Alignment:
| Q |
72 |
taggatggtatttgatcatagcttaattttagtgcaggtaaaatatcattttgcatctgttctaaattccatatctcagaatctcttataaattcccact |
171 |
Q |
| |
|
||||||| |||||||||||||||||||| || |||||||||||||||| || | |||||||||||||| || |||| ||||| | ||||||||||| |
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|
| T |
35951937 |
taggatgacatttgatcatagcttaatttcagggcaggtaaaatatcatctttctgttgttctaaattccaaatagcagagtctctgacaaattcccact |
35952036 |
T |
|
| Q |
172 |
tatttaaatcaaattttgaaaacagagaactt |
203 |
Q |
| |
|
|| ||||||| || ||||| || || |||||| |
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| T |
35952037 |
tacttaaatcgaagtttgagaagagggaactt |
35952068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 51 - 197
Target Start/End: Original strand, 18117552 - 18117698
Alignment:
| Q |
51 |
taagcaaaacagtgcctcaagtaggatggtatttgatcatagcttaattttagtgcaggtaaaatatcattttgcatctgttctaaattccatatctcag |
150 |
Q |
| |
|
|||||||| |||||||| || |||||||| |||| |||||||||||||||||||||||||||||||||||||||| | ||||||||| |||| ||||||| |
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| T |
18117552 |
taagcaaagcagtgccttaaataggatggcattttatcatagcttaattttagtgcaggtaaaatatcattttgcttttgttctaaagtccacatctcag |
18117651 |
T |
|
| Q |
151 |
aatctcttataaattcccacttatttaaatcaaattttgaaaacaga |
197 |
Q |
| |
|
| |||||| || |||||| ||||||||||||||||||||||||||| |
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|
| T |
18117652 |
agtctcttgcaagttcccatttatttaaatcaaattttgaaaacaga |
18117698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 29 - 203
Target Start/End: Original strand, 18125183 - 18125357
Alignment:
| Q |
29 |
atctttgggatatagggaaaaataagcaaaacagtgcctcaagtaggatggtatttgatcatagcttaattttagtgcaggtaaaatatcattttgcatc |
128 |
Q |
| |
|
|||||| ||||| ||||| ||||||||||| || ||||| || |||||||| ||||| |||||||| ||||||||||||||||||||||||| || | |
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|
| T |
18125183 |
atctttaggataaagggagaaataagcaaagcattgccttaaataggatggcatttggtcatagctcaattttagtgcaggtaaaatatcatctttttgc |
18125282 |
T |
|
| Q |
129 |
tgttctaaattccatatctcagaatctcttataaattcccacttatttaaatcaaattttgaaaacagagaactt |
203 |
Q |
| |
|
|||| ||||||||| | |||||||||||||| |||| ||| ||||||||||||||||||| || || |||||| |
|
|
| T |
18125283 |
tgttttaaattccacagctcagaatctcttacaaatatccatgtatttaaatcaaattttgagaatagggaactt |
18125357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 27 - 120
Target Start/End: Complemental strand, 26329243 - 26329150
Alignment:
| Q |
27 |
taatctttgggatatagggaaaaataagcaaaacagtgcctcaagtaggatggtatttgatcatagcttaattttagtgcaggtaaaatatcat |
120 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||| || ||||| |||||||| ||||||||||||||||| || || ||||||||||||||| |
|
|
| T |
26329243 |
taatctttgggaaaaagggaaaaataagcaaaacaatgtctcaaataggatggcatttgatcatagcttaacttaagcacaggtaaaatatcat |
26329150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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