View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11280A_low_362 (Length: 211)

Name: NF11280A_low_362
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11280A_low_362
NF11280A_low_362
[»] chr4 (5 HSPs)
chr4 (82-190)||(17167526-17167634)
chr4 (82-190)||(17173103-17173211)
chr4 (131-190)||(17251590-17251649)
chr4 (82-139)||(17251188-17251245)
chr4 (19-87)||(17250438-17250506)


Alignment Details
Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 82 - 190
Target Start/End: Complemental strand, 17167634 - 17167526
Alignment:
Q  82 tttgatatgtttaagtcactacaaaatagtcaaattttgtttttccttataaaaacaaaatcttactatttgtcctccaaatgatttcttttaagtagtt 181  Q
    ||||||||||||||||||||||||||||||| |||||| |||| | |||||||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  17167634 tttgatatgtttaagtcactacaaaatagtctaatttttttttccgttataaaaacaaaatcttacaatttgtcctccaaatgttttcttttaagtagtt 17167535  T
Q  182 ttagtccat 190  Q
    |||||||||    
T  17167534 ttagtccat 17167526  T

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Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 82 - 190
Target Start/End: Complemental strand, 17173211 - 17173103
Alignment:
Q  82 tttgatatgtttaagtcactacaaaatagtcaaattttgtttttccttataaaaacaaaatcttactatttgtcctccaaatgatttcttttaagtagtt 181  Q
    ||||||||||||||||||||||||||||||| |||||| |||| | |||||||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  17173211 tttgatatgtttaagtcactacaaaatagtctaatttttttttccgttataaaaacaaaatcttacaatttgtcctccaaatgttttcttttaagtagtt 17173112  T
Q  182 ttagtccat 190  Q
    |||||||||    
T  17173111 ttagtccat 17173103  T

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Target: chr4; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 131 - 190
Target Start/End: Original strand, 17251590 - 17251649
Alignment:
Q  131 taaaaacaaaatcttactatttgtcctccaaatgatttcttttaagtagttttagtccat 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17251590 taaaaacaaaatcttactatttgtcctccaaatgatttcttttaagtagttttagtccat 17251649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 82 - 139
Target Start/End: Original strand, 17251188 - 17251245
Alignment:
Q  82 tttgatatgtttaagtcactacaaaatagtcaaattttgtttttccttataaaaacaa 139  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  17251188 tttgatatgtttaagtcactacaaaatagtcaaattttgtttttgcttataaaaacaa 17251245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 17250438 - 17250506
Alignment:
Q  19 atgctctacataatattaataaaaaggttaaataagtcaattgtccctcaaaatataaaaacatttgat 87  Q
    |||||||||||| |||||||||||||||||||||||| ||| |||| || ||||||| |||||||||||    
T  17250438 atgctctacatattattaataaaaaggttaaataagtaaatggtccttccaaatatacaaacatttgat 17250506  T

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