View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11280A_low_37 (Length: 372)
Name: NF11280A_low_37
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_37 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 118 - 239
Target Start/End: Complemental strand, 35891622 - 35891501
Alignment:
| Q |
118 |
actgagaagaaaaggaaacaattatggtttcttggaatatcatatcatgattctatatacaacatatgcaccaaaactaatcaagaagtttttggttttc |
217 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35891622 |
actgaaaagaaaaggaaacaattatgttttcttggaatatcatatcatgattctatatacaacatatgcaccaaaactaatcaagaagtttttggttttc |
35891523 |
T |
|
| Q |
218 |
tacaaaattagacacttaattt |
239 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
35891522 |
tacaaaattagacacttaattt |
35891501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 124 - 239
Target Start/End: Complemental strand, 21445875 - 21445763
Alignment:
| Q |
124 |
aagaaaaggaaacaattatggtttcttggaatatcatatcatgattctatatacaacatatgcaccaaaactaatcaagaagtttttggttttctacaaa |
223 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| |||||| ||| || | ||| ||| ||||||| |||||||||| ||||| | || || ||| |
|
|
| T |
21445875 |
aagaaaaggaaacaattatggttt-ttggaatatcatttcatgagtctttacaaaacctatacaccaaagttaatcaagaactttttag--ttatagaaa |
21445779 |
T |
|
| Q |
224 |
attagacacttaattt |
239 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
21445778 |
attagacacttaattt |
21445763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 124 - 180
Target Start/End: Complemental strand, 29624419 - 29624364
Alignment:
| Q |
124 |
aagaaaaggaaacaattatggtttcttggaatatcatatcatgattctatatacaac |
180 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||| |||||| |||||||||||| |
|
|
| T |
29624419 |
aagaaaaggaaacaattacggttt-ttggaatatcatttcatgagtctatatacaac |
29624364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University