View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11280A_low_371 (Length: 206)
Name: NF11280A_low_371
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_371 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 22 - 177
Target Start/End: Original strand, 35880509 - 35880664
Alignment:
| Q |
22 |
agagataagtggaagaccggggcattatcaagtcaaggtcgcatgcgatgcgtttttctccaaactgaagctcatattaaggggcagcttaattaggaaa |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35880509 |
agagataagtggaagaccggggcattatcaagtcaaggtcgcatgcgatgcgtttttctccaaactgaagctcatattaaggggcagcttaattaggaaa |
35880608 |
T |
|
| Q |
122 |
acatcgtcaatcttttctcatggctatgttatctcattccgagtgagcttgtatat |
177 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
35880609 |
acatcgtcaatcttttctcatggctatgttatctcattccaagtgagcttgtatat |
35880664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 22 - 177
Target Start/End: Original strand, 24454710 - 24454865
Alignment:
| Q |
22 |
agagataagtggaagaccggggcattatcaagtcaaggtcgcatgcgatgcgtttttctccaaactgaagctcatattaaggggcagcttaattaggaaa |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24454710 |
agagataagtggaagaccggggcattatcaagtcaaggtcgcatgcgatgcgtttttctccaaactgaagctcatattaaggggcagcttaattaggaaa |
24454809 |
T |
|
| Q |
122 |
acatcgtcaatcttttctcatggctatgttatctcattccgagtgagcttgtatat |
177 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
24454810 |
acatcgtcaatcttttctcatggctatgttatctcattccaagtgagcttgtatat |
24454865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University