View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11280A_low_376 (Length: 205)

Name: NF11280A_low_376
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11280A_low_376
NF11280A_low_376
[»] chr8 (2 HSPs)
chr8 (1-189)||(13274533-13274722)
chr8 (2-31)||(38061314-38061343)
[»] chr6 (4 HSPs)
chr6 (63-187)||(14923317-14923444)
chr6 (2-52)||(21182634-21182684)
chr6 (3-52)||(20758799-20758848)
chr6 (2-50)||(34237342-34237390)
[»] chr7 (4 HSPs)
chr7 (63-178)||(21817602-21817717)
chr7 (3-52)||(24509643-24509692)
chr7 (2-52)||(2435115-2435165)
chr7 (2-46)||(2432903-2432947)
[»] chr4 (4 HSPs)
chr4 (2-58)||(6686446-6686502)
chr4 (3-52)||(6683219-6683268)
chr4 (2-50)||(579967-580015)
chr4 (3-33)||(8532522-8532552)
[»] scaffold0211 (1 HSPs)
scaffold0211 (3-58)||(20884-20939)
[»] chr3 (1 HSPs)
chr3 (2-52)||(26362569-26362619)
[»] chr2 (2 HSPs)
chr2 (2-52)||(24412057-24412107)
chr2 (3-115)||(18337072-18337184)


Alignment Details
Target: chr8 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 13274533 - 13274722
Alignment:
Q  1 agattttccgcgtaattatacgctaatcccccaggatataacagacccttctgaatattatt-aaggatacagaaactagcaagaatataaattattcag 99  Q
    |||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| || |||||    
T  13274533 agattttccgcgtaattatacgttaatcccctaggatataacatacccttctgaatattattcaaggatacagaaactagcaagaatataatttcttcag 13274632  T
Q  100 gaagatgaaacccaaaatgtgtattagcttaatgaaaattgattttgtattgtttatgtatatgtctaaaagcatgaaagtaagaataat 189  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||    
T  13274633 gaagatgaaacccaaaatgtgtattagcttgatgaaaattgattttgtattgtttatgtatatgtctaaaaccatgaaagtaaggataat 13274722  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 31
Target Start/End: Complemental strand, 38061343 - 38061314
Alignment:
Q  2 gattttccgcgtaattatacgctaatcccc 31  Q
    ||||||||||||||||||||||||||||||    
T  38061343 gattttccgcgtaattatacgctaatcccc 38061314  T

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Target: chr6 (Bit Score: 76; Significance: 2e-35; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 63 - 187
Target Start/End: Complemental strand, 14923444 - 14923317
Alignment:
Q  63 aaggatacagaaactagcaagaatataaattattcaggaagatgaaacccaaaatgtgtattagcttaatgaaaattgattttgtattg----tttatgt 158  Q
    |||||||||||| ||||||||||||||| ||| ||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||    | |||||    
T  14923444 aaggatacagaa-ctagcaagaatataatttaatcaggaagatgaaacccaagatgtgcattagcttgatgaaaattgattttgtattggttatgtatgt 14923346  T
Q  159 atatgtctaaaagcatgaaagtaagaata 187  Q
    |||||||||||||||||||||| ||||||    
T  14923345 atatgtctaaaagcatgaaagtgagaata 14923317  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 21182634 - 21182684
Alignment:
Q  2 gattttccgcgtaattatacgctaatcccccaggatataacagacccttct 52  Q
    |||||| || ||||||||||||||||||| |||||| ||||||||||||||    
T  21182634 gatttttcgtgtaattatacgctaatccctcaggatttaacagacccttct 21182684  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 20758799 - 20758848
Alignment:
Q  3 attttccgcgtaattatacgctaatcccccaggatataacagacccttct 52  Q
    ||||||| |||  |||||||||||||||||| ||| ||||||||||||||    
T  20758799 attttccacgtgtttatacgctaatcccccaagatttaacagacccttct 20758848  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 34237342 - 34237390
Alignment:
Q  2 gattttccgcgtaattatacgctaatcccccaggatataacagaccctt 50  Q
    |||||||||||||||||||| |||||  || ||||| ||||||||||||    
T  34237342 gattttccgcgtaattatacactaatttcctaggatttaacagaccctt 34237390  T

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Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 63 - 178
Target Start/End: Complemental strand, 21817717 - 21817602
Alignment:
Q  63 aaggatacagaaactagcaagaatataaattattcaggaagatgaaacccaaaatgtgtattagcttaatgaaaattgattttgtattgtttatgtatat 162  Q
    ||||||||| ||||||| |||||||||| ||| ||| | |||||||| |||| |||||||| | ||| |||||||| ||||||  |||| || |||||||    
T  21817717 aaggatacataaactagaaagaatataatttaatcaaggagatgaaatccaagatgtgtataaacttgatgaaaatggatttttgattggttctgtatat 21817618  T
Q  163 gtctaaaagcatgaaa 178  Q
    |||| |||||||||||    
T  21817617 gtctcaaagcatgaaa 21817602  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 24509643 - 24509692
Alignment:
Q  3 attttccgcgtaattatacgctaatcccccaggatataacagacccttct 52  Q
    |||||||||||||||||||||||||| |||||||| ||||| ||||||||    
T  24509643 attttccgcgtaattatacgctaatcgcccaggatttaacaaacccttct 24509692  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 2435165 - 2435115
Alignment:
Q  2 gattttccgcgtaattatacgctaatcccccaggatataacagacccttct 52  Q
    |||||| |||||||||||||| |||||||||| ||| ||||| ||||||||    
T  2435165 gatttttcgcgtaattatacgttaatcccccaagatttaacatacccttct 2435115  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 2432947 - 2432903
Alignment:
Q  2 gattttccgcgtaattatacgctaatcccccaggatataacagac 46  Q
    |||||||| ||||||||||||||||||| ||| ||| ||||||||    
T  2432947 gattttccacgtaattatacgctaatcctccaagatttaacagac 2432903  T

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Target: chr4 (Bit Score: 45; Significance: 8e-17; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 6686502 - 6686446
Alignment:
Q  2 gattttccgcgtaattatacgctaatcccccaggatataacagacccttctgaatat 58  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||    
T  6686502 gattttccgcgtaattatacgctaatcccccaggatttaacagaccattctcaatat 6686446  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 6683268 - 6683219
Alignment:
Q  3 attttccgcgtaattatacgctaatcccccaggatataacagacccttct 52  Q
    ||||||||||||||||||||||||||| ||||||| | |||||| |||||    
T  6683268 attttccgcgtaattatacgctaatcctccaggatttcacagactcttct 6683219  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 579967 - 580015
Alignment:
Q  2 gattttccgcgtaattatacgctaatcccccaggatataacagaccctt 50  Q
    ||||||||||||||||||||| ||||||||||| || |||| |||||||    
T  579967 gattttccgcgtaattatacgttaatcccccagaatttaacggaccctt 580015  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 33
Target Start/End: Original strand, 8532522 - 8532552
Alignment:
Q  3 attttccgcgtaattatacgctaatccccca 33  Q
    |||||||||||||||||||||||||||||||    
T  8532522 attttccgcgtaattatacgctaatccccca 8532552  T

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Target: scaffold0211 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 20884 - 20939
Alignment:
Q  3 attttccgcgtaattatacgctaatcccccaggatataacagacccttctgaatat 58  Q
    |||||| ||||||||||| |||||||| ||||||| |||||||||||||| |||||    
T  20884 attttctgcgtaattatatgctaatcctccaggatttaacagacccttcttaatat 20939  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 26362619 - 26362569
Alignment:
Q  2 gattttccgcgtaattatacgctaatcccccaggatataacagacccttct 52  Q
    |||||| ||| |||||||||||||||||| || ||| ||||||||||||||    
T  26362619 gatttttcgcataattatacgctaatccctcatgatttaacagacccttct 26362569  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 24412057 - 24412107
Alignment:
Q  2 gattttccgcgtaattatacgctaatcccccaggatataacagacccttct 52  Q
    |||||| ||||||||||| | |||||||||||  |||||||||||||||||    
T  24412057 gattttacgcgtaattatgctctaatcccccaaaatataacagacccttct 24412107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 115
Target Start/End: Complemental strand, 18337184 - 18337072
Alignment:
Q  3 attttccgcgtaattatacgctaatcccccaggatataacagacccttctgaatattatt-aaggatacagaaactagcaagaatataaattattcagga 101  Q
    |||||||||||| | ||||||||| |||| || || |||||||| |||||  ||  || | |||||| || |||||||||||||||||| ||| || |||    
T  18337184 attttccgcgta-taatacgctaacccccaagaatttaacagactcttcttgatggtaatcaaggatgcataaactagcaagaatataatttaatctgga 18337086  T
Q  102 agatgaaacccaaa 115  Q
    |||||||| |||||    
T  18337085 agatgaaatccaaa 18337072  T

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