View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11280A_low_383 (Length: 201)
Name: NF11280A_low_383
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_383 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 124; Significance: 5e-64; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 124; E-Value: 5e-64
Query Start/End: Original strand, 19 - 182
Target Start/End: Complemental strand, 54728101 - 54727927
Alignment:
| Q |
19 |
agttttttgtcatagtgtgcaatatatgaatgaatattatcaagatctatattaattaacgtggccttgatggtcatagaaggagataaatgttactatg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
54728101 |
agttttttgtcatagtgtgcaatatatgaatgaatattatcaagatctatattaattaacgtggccttgatggttatagaaggagataaatgttactatg |
54728002 |
T |
|
| Q |
119 |
tttgaa-acactc----------cctctctaatactcattcttcaattggttgaaacctatattaatttcaccat |
182 |
Q |
| |
|
|||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54728001 |
tttgaacactctctttctagcatcctctctaatactcattcttcaattggttgaaacctatattaatttcaccat |
54727927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 76; Significance: 2e-35; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 5302763 - 5302684
Alignment:
| Q |
19 |
agttttttgtcatagtgtgcaatatatgaatgaatattatcaagatctatattaattaacgtggccttgatggtcataga |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
5302763 |
agttttttgtcatagtgtgcaatatatgaatgaatattatcaagatctatattaattaacgtggccttgatggttataga |
5302684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University