View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11280A_low_39 (Length: 371)

Name: NF11280A_low_39
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11280A_low_39
NF11280A_low_39
[»] chr7 (5 HSPs)
chr7 (13-320)||(40697258-40697571)
chr7 (13-330)||(40698144-40698445)
chr7 (93-191)||(15319817-15319915)
chr7 (8-150)||(15317379-15317520)
chr7 (19-51)||(15319943-15319975)
[»] chr1 (5 HSPs)
chr1 (13-188)||(9650676-9650850)
chr1 (8-369)||(35963856-35964213)
chr1 (13-369)||(9648472-9648821)
chr1 (13-320)||(35964675-35964958)
chr1 (228-371)||(9650536-9650679)
[»] chr3 (2 HSPs)
chr3 (25-314)||(33094909-33095198)
chr3 (156-243)||(33095474-33095563)
[»] chr8 (3 HSPs)
chr8 (228-371)||(23930400-23930535)
chr8 (85-314)||(26625244-26625474)
chr8 (13-141)||(45051791-45051913)


Alignment Details
Target: chr7 (Bit Score: 113; Significance: 4e-57; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 13 - 320
Target Start/End: Original strand, 40697258 - 40697571
Alignment:
Q  13 aatattctaaaacaaaatgataaaa-tcatatcctagtcactccacattgagaaaaatcagcctataaaagtggctcttttaaagacaagtcaacaactt 111  Q
    |||||||||||||||||||| |||| | |||||||||||||||||||||||||||| ||||||| |||   | |||| | |||| |||||||| ||||||    
T  40697258 aatattctaaaacaaaatgaaaaaaattatatcctagtcactccacattgagaaaa-tcagcctctaagcctagctcatctaaa-acaagtcagcaactt 40697355  T
Q  112 caagaaatccaccatcatccaatgatccaacctcatctctagcgacatcccacattttagtttccttttgatgatattggag--tgcttcttgatagaag 209  Q
    || ||||||||| |||||| |||||||||| |||||||| | |||||||||||||||||||||||| ||||||||||| |||  |||| |||||||||||    
T  40697356 caggaaatccactatcatctaatgatccaaactcatctccaacgacatcccacattttagtttcctcttgatgatattagagagtgctccttgatagaag 40697455  T
Q  210 tcga-----aggttactatgcaaatatactaaaccttcctctttgcgtggtgccatcttgtttctcttccaagactgaataattgaatatgtgctccaat 304  Q
    | ||     |||||||||  || ||||||||||  |||| || |  ||||||||||||||||||||||| |||| |  || | |||||||||| ||||||    
T  40697456 ttgagttgaaggttactacacacatatactaaagtttccgctctatgtggtgccatcttgtttctcttcaaagaatagatgaatgaatatgtgttccaat 40697555  T
Q  305 ttctttcacagcatga 320  Q
    |||||||||| |||||    
T  40697556 ttctttcacaacatga 40697571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 13 - 330
Target Start/End: Complemental strand, 40698445 - 40698144
Alignment:
Q  13 aatattctaaaacaaaatgataaaatcatatcctagtcactccacattgagaaaaatcagcctataaaagtggctcttttaaagacaagtcaacaacttc 112  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||   | |||| | ||||||||||||||           
T  40698445 aatattttaaaacaaaatgataaaatcatatcctagtcactccacattgagaaaa-tcagcctctaagcctagctcatctaaagacaagtcaa------- 40698354  T
Q  113 aagaaatccaccatcatccaatgatccaacctcatctctagcgacatcccacattttagtttccttttgatgatattgg--agtgcttcttgatagaagt 210  Q
      ||||||||| |||||||||         |||||||| | ||| |||||||||||||||||| | |||||| ||||||  |||| |  |||||||||||    
T  40698353 --gaaatccactatcatccaaa--------ctcatctccaacgatatcccacattttagtttcttcttgatggtattggggagtgttctttgatagaagt 40698264  T
Q  211 cgaaggttactatgcaaatatactaaaccttcctctttgcgtggtgccatcttgtttctcttccaagactgaataattgaatatgtgctccaatttcttt 310  Q
    |||||||||||||| |||||||| ||| ||||| || |  ||||||| ||| |||||||| || |||| || | || ||||||||||| | |||||||||    
T  40698263 cgaaggttactatgtaaatataccaaagcttccgctctatgtggtgcaatcatgtttctcatcaaagaatggaaaaatgaatatgtgcactaatttcttt 40698164  T
Q  311 cacagcatgatgaagaacaa 330  Q
    |||| ||||| || ||||||    
T  40698163 cacaacatgaagatgaacaa 40698144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 93 - 191
Target Start/End: Complemental strand, 15319915 - 15319817
Alignment:
Q  93 aaagacaagtcaacaacttcaagaaatccaccatcatccaatgatccaacctcatctctagcgacatcccacattttagtttccttttgatgatattgg 191  Q
    ||||| || ||| |||||||||||||||||| ||||||||||||||||| ||   ||| || ||||||||||||||||||||| | |||||||||||||    
T  15319915 aaagagaaatcagcaacttcaagaaatccactatcatccaatgatccaaacttggctccagtgacatcccacattttagtttcatcttgatgatattgg 15319817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 150
Target Start/End: Original strand, 15317379 - 15317520
Alignment:
Q  8 cgaagaatattctaaaacaaaatgataaaatcatatcctagtcactccacattgagaaaaatcagcctataaaagtggctcttttaaagacaagtcaaca 107  Q
    |||| ||||||| |||||||| | | |||||||||||||||||||| || ||||||||||  || | | |||   ||| || | ||||||||| ||| ||    
T  15317379 cgaaaaatattcgaaaacaaattaaaaaaatcatatcctagtcactacatattgagaaaac-caacatctaatcctggttcatctaaagacaattcagca 15317477  T
Q  108 acttcaagaaatccaccatcatccaatgatccaacctcatctc 150  Q
    |||||||||||||||| || ||||||||||| || ||||||||    
T  15317478 acttcaagaaatccactatgatccaatgatctaaactcatctc 15317520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 15319975 - 15319943
Alignment:
Q  19 ctaaaacaaaatgataaaatcatatcctagtca 51  Q
    |||||||||||||||||||||||||||||||||    
T  15319975 ctaaaacaaaatgataaaatcatatcctagtca 15319943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 108; Significance: 4e-54; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 13 - 188
Target Start/End: Complemental strand, 9650850 - 9650676
Alignment:
Q  13 aatattctaaaacaaaatgataaaatcatatcctagtcactccacattgagaaaaatcagcctataaaagtggctcttttaaagacaagtcaacaacttc 112  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||  | |||  | ||||||||| |||||||||||    
T  9650850 aatattctaaaacaaaatgataaaatcatatccttgtcactccacattgagaaaa-tcagcctctaaacctagctaatctaaagacaaatcaacaacttc 9650752  T
Q  113 aagaaatccaccatcatccaatgatccaacctcatctctagcgacatcccacattttagtttccttttgatgatat 188  Q
    ||||||||||| ||||||||||||||||| |||||||| | |||||||||||||||||||||| | ||||||||||    
T  9650751 aagaaatccactatcatccaatgatccaaactcatctccaacgacatcccacattttagtttcttcttgatgatat 9650676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 8 - 369
Target Start/End: Original strand, 35963856 - 35964213
Alignment:
Q  8 cgaagaatattctaaaacaaaatgataaaatcatatcctagtcactccacattgagaaaaatcagcctataaaagtggctcttttaaagacaagtcaac- 106  Q
    |||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||| ||    | ||||   | | |||||||||||     
T  35963856 cgaaaaatattctaaaacaaaatgataaa-tcatatcctagtcattccacattgagaaaa-tcagcctctatgcctagctcagatgaggacaagtcaact 35963953  T
Q  107 ----aacttcaagaaatccaccatcatccaatgatccaacctcatctctagcgacatcccacattttagtttccttttgatgatattgg--agtgcttct 200  Q
        ||||||||||||||||| |||||||||         ||||||||||||||||||||| |||||| |||||| |||||||||||||  |||| | ||    
T  35963954 cagcaacttcaagaaatccactatcatccaaa--------ctcatctctagcgacatcccatattttactttcctcttgatgatattggggagtgatcct 35964045  T
Q  201 tgatagaagtcgaaggttactatgcaaatatactaaaccttcctctttgcgtggtgccatcttgtttctcttccaagactgaataattgaatatgtgctc 300  Q
    |||||||||||||||||||||||||| |||||||||| ||||| || |  |||||| ||||||||||||||| ||| | || |||| ||||||||| ||     
T  35964046 tgatagaagtcgaaggttactatgcacatatactaaagcttccgctctatgtggtgtcatcttgtttctctt-caaaaatggataaatgaatatgtactt 35964144  T
Q  301 caatttctttcacagcatgatgaagaacaagacttttcaagtagcttaagtgtaagcatttgaagtaat 369  Q
    |||||||||||||| ||||| || | |||||  | ||||||||||||| ||| |  | |||||||||||    
T  35964145 caatttctttcacaacatgaagatggacaaggttgttcaagtagcttaggtgcatccttttgaagtaat 35964213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 13 - 369
Target Start/End: Original strand, 9648472 - 9648821
Alignment:
Q  13 aatattctaaaacaaaatgataaaatcatatcctagtcactccacattgagaaaaatcagcctataaaagtggctcttttaaagacaagtcaacaacttc 112  Q
    |||||| ||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||| |||  || |||| | ||||||||||||| |||| ||    
T  9648472 aatattttaaaacaaaataataaaatcatatcctagtcactctacattgag-aaaatcagcctctaagcgtagctcatgtaaagacaagtcagcaacatc 9648570  T
Q  113 aagaaatccaccatcatccaatgatccaacctcatctctagcgacatcccacattttagtttccttttgatgatatt--ggagtgcttcttgatagaagt 210  Q
    ||||||||||| |||        |||||| |||||||| ||||| |||||||||||||||||| | |||||| ||||  |||||||| |||| |||||||    
T  9648571 aagaaatccactatc--------atccaaactcatctccagcgatatcccacattttagtttcttcttgatggtattggggagtgctccttgttagaagt 9648662  T
Q  211 cgaaggttactatgcaaatatactaaaccttcctctttgcgtggtgccatcttgtttctcttccaagact-gaataattgaatatgtgctccaatttctt 309  Q
    |||||||||||||||||||| ||||||  ||||  | | ||||||||  || ||||||||||| |||| | ||| ||||  || ||||||| ||||||||    
T  9648663 cgaaggttactatgcaaatagactaaagtttccggtctacgtggtgcagtcatgtttctcttcaaagaatggaaaaattatat-tgtgctctaatttctt 9648761  T
Q  310 tcacagcatgatgaagaacaagacttttcaagtagcttaagtgtaagcatttgaagtaat 369  Q
    | ||| ||||| || |||||| ||  | ||||||||||| ||| || | |||||||||||    
T  9648762 ttacaacatgaagatgaacaaaaccgtgcaagtagcttatgtgcaaccttttgaagtaat 9648821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 13 - 320
Target Start/End: Complemental strand, 35964958 - 35964675
Alignment:
Q  13 aatattctaaaacaaaatgataaaatcatatcctagtcactccacattgagaaaaatcagcctataaaagtggctcttttaaagacaagtcaacaacttc 112  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||||| |||||| |||||||        ||||| | | ||||||||||||| ||| |    
T  35964958 aatattctacaacaaaatgatcaaatcatatcctagtcactccacattcagaaaa-tcagcct--------ggctcatctgaagacaagtcaacgactac 35964868  T
Q  113 aagaaatccaccatcatccaatgatccaacctcatctctagcgacatcccacattttagtttccttttgatgatattg--gagtgcttcttgatagaagt 210  Q
    ||||||||||| ||||       ||| ||| ||||||| | || ||||||||||||          ||||||||||||  ||||| | | ||||||||||    
T  35964867 aagaaatccactatca-------atcaaac-tcatctccaacggcatcccacatttc---------ttgatgatattgaggagtgttccgtgatagaagt 35964785  T
Q  211 cgaaggttactatgcaaatatactaaaccttcctctttgcgtggtgccatcttgtttctcttccaagactgaataattgaatatgtgctccaatttcttt 310  Q
    |||||||||||||||| ||||||||||  |||| || |  |||||| |||||||||||||||| |||| ||||||| |||||||||||||||||| ||||    
T  35964784 cgaaggttactatgcacatatactaaagtttccgctctatgtggtgtcatcttgtttctcttcaaagaatgaataaatgaatatgtgctccaattgcttt 35964685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 228 - 371
Target Start/End: Complemental strand, 9650679 - 9650536
Alignment:
Q  228 atatactaaaccttcctctttgcgtggtgccatcttgtttctcttccaagactgaataattgaatatgtgctccaatttctttcacagcatgatgaagaa 327  Q
    |||||||||| ||||| || |  ||||||||||||||||||||||| |||| |  |||| ||||||||||||||||||||||||||| ||||| || | |    
T  9650679 atatactaaagcttccgctctatgtggtgccatcttgtttctcttcaaagaatagataaatgaatatgtgctccaatttctttcacaacatgaagacgta 9650580  T
Q  328 caagacttttcaagtagcttaagtgtaagcatttgaagtaatgg 371  Q
    ||||  | | |||||| |||||||| || | |||||||||||||    
T  9650579 caaggttgtgcaagtaacttaagtgcaaccttttgaagtaatgg 9650536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 25 - 314
Target Start/End: Original strand, 33094909 - 33095198
Alignment:
Q  25 caaaatgataaaatcatatcctagtcactccacattgagaaaaatcagcctataaaagtggctcttttaaagacaagtcaacaacttcaagaaatccacc 124  Q
    |||||||||||||||| ||||||||||||| | | |||||||| ||| ||  |||  ||| ||| | ||||||| || ||| ||||||||||||| |||     
T  33094909 caaaatgataaaatcacatcctagtcactctataatgagaaaa-tcaaccattaatcgtgtctcatctaaagacgagccaataacttcaagaaattcacg 33095007  T
Q  125 atcatccaatgatccaacctcatctctagcgacatcccacattttagtttcc---ttttgatgatattggagtgcttcttgatagaagtcgaaggttact 221  Q
    ||||||||||||||||| |||||||  | ||||||  |||||||||||||||   | ||||| |||  |||||||||||||||||||| | || ||||||    
T  33095008 atcatccaatgatccaaactcatcttcaacgacatttcacattttagtttcctcttattgataataggggagtgcttcttgatagaagccaaatgttact 33095107  T
Q  222 atgcaaatatactaaaccttcctctttgcgtggtgccatcttgtttctcttccaa-gactgaataattgaatatgtgctccaatttctttcaca 314  Q
    ||||| |||||| ||| |||||| |||  |||||   ||||||||||||||| || || || |||| | |||||||||||||||| ||||||||    
T  33095108 atgcacatataccaaagcttcctttttatgtggt---atcttgtttctcttcaaatgaatggataaattaatatgtgctccaattactttcaca 33095198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 156 - 243
Target Start/End: Complemental strand, 33095563 - 33095474
Alignment:
Q  156 acatcccacattttagtttccttttgatgatattgga--gtgcttcttgatagaagtcgaaggttactatgcaaatatactaaaccttcc 243  Q
    ||||||||||||||||||| || || ||||| |||||  ||||| ||||| | |||| ||||||||||||||||| |||||||| |||||    
T  33095563 acatcccacattttagttttctcttaatgatgttggattgtgctccttgaaataagttgaaggttactatgcaaaaatactaaagcttcc 33095474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 228 - 371
Target Start/End: Complemental strand, 23930535 - 23930400
Alignment:
Q  228 atatactaaaccttcctctttgcgtggtgccatcttgtttctcttccaagactgaataattgaatatgtgctccaatttctttcacagcatgatgaagaa 327  Q
    |||||||||| |||| ||| |  ||||||||||||||||||||||| |||| || |||||||        ||| |||||| |||||| ||||| || |||    
T  23930535 atatactaaagcttcttctctatgtggtgccatcttgtttctcttcaaagaatggataattg--------ctctaatttcattcacaacatgaagatgaa 23930444  T
Q  328 caagacttttcaagtagcttaagtgtaagcatttgaagtaatgg 371  Q
    |||| || | |||||||||||||||||| | |||||||||||||    
T  23930443 caaggctatgcaagtagcttaagtgtaaccttttgaagtaatgg 23930400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 85 - 314
Target Start/End: Original strand, 26625244 - 26625474
Alignment:
Q  85 gctcttttaaagacaagtcaacaacttcaagaaatccaccatcatccaatgatccaac-----ctcatctctagcgacatcccacattttagtttccttt 179  Q
    |||| ||||||||||||| | ||||||||| |||||||| |||||| ||||||| ||      ||||||||| ||  |||| |||||||||||||||| |    
T  26625244 gctcatttaaagacaagttagcaacttcaaaaaatccactatcatcaaatgatcaaaaatttactcatctcttgcaccatcacacattttagtttcctct 26625343  T
Q  180 tgatgatattggagtg--cttcttgatagaagtcgaaggttactatgcaaatatactaaaccttcctctttgcgtggtgccatcttgtttctcttccaag 277  Q
    |||||||||||| |||  ||||||||| ||||      ||||| ||| | |||||||||  ||||  || |      ||||||||||||||||||  |||    
T  26625344 tgatgatattggggtgtacttcttgattgaag------gttacgatggacatatactaattcttcagctctcgcaactgccatcttgtttctctttaaag 26625437  T
Q  278 actgaataattgaatatgtgctccaatttctttcaca 314  Q
    | || |||| |||||||||||||||| ||||||||||    
T  26625438 aatggataaatgaatatgtgctccaacttctttcaca 26625474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 141
Target Start/End: Original strand, 45051791 - 45051913
Alignment:
Q  13 aatattctaaaacaaaatgataaaatcatatcctagtcactccacattgagaaaaatcagcctataaaagtggctcttttaaagacaagtcaacaacttc 112  Q
    |||||| |||| |||||||||||||||||||||| | ||||||     ||||||| ||||||| |||   |  ||| | ||||||||||| |||||||||    
T  45051791 aatattgtaaagcaaaatgataaaatcatatccttgccactcc-----gagaaaa-tcagcctctaagtctaactcatctaaagacaagtaaacaacttc 45051884  T
Q  113 aagaaatccaccatcatccaatgatccaa 141  Q
    ||||||| ||  ||||||| |||||||||    
T  45051885 aagaaattcattatcatccgatgatccaa 45051913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University