View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11280A_low_4 (Length: 603)
Name: NF11280A_low_4
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 555; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 20 - 603
Target Start/End: Complemental strand, 42444839 - 42444252
Alignment:
| Q |
20 |
catcaggtgtgattcctgaatctagaacaccaataataattccctttccaaaatttgattccttccaaaatccgatattttgctgcaaccccaagaaatc |
119 |
Q |
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| T |
42444839 |
catcaggtgtgattcctgaatctagaacaccaataataattccctttccaaaatttgattccttccaagatccgatattttgctgcaaccccaagaaatc |
42444740 |
T |
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| Q |
120 |
tggggtatgtgtggtttgacgacgtagtgtcctttcgggatgagctgaaacaaaaccattcttctgttcaacagctctcaactcttcttgagttagtctt |
219 |
Q |
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| T |
42444739 |
tggggtatgtgtggtttgacgacgtagtgtcctttcgggatgagctgaaacaaaaccattcttctgttgaacagctctcaactcttcttgagttagtctt |
42444640 |
T |
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| Q |
220 |
gcggcaaaaccactcaacacatttctgtatgaataaatcattcgcggttgttcatcagagctcataaccgtagttggcatgaatgaatgatgccagcttt |
319 |
Q |
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| T |
42444639 |
gcggcaaaaccactcaacacatttcggtatgaataaatcattcgcggttgttcatcagagctcataaccgtagttggcatgaatgaatgatgccagcttt |
42444540 |
T |
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| Q |
320 |
ctaaatcttcttctgattgagtgaatagcttaccctctggcttattcacatggataatgtatatttttgaagtgcttgtctcagtactccgagcggtagg |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42444539 |
ctaaatcttcttctgattgagtgaatagcttaccctctggcttattcacatggataatgtatatttttgaagtgcttgtctcagtactccgagcggtagg |
42444440 |
T |
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| Q |
420 |
gtgcagttcacttccttgagtaaaatgaatatggaaactcaacacgaaagtgagagcaatgaaaaggaaataatccatgttcaagagaaactttactttc |
519 |
Q |
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| T |
42444439 |
gtgcagttcacttccttgagtaaaatgaatatggaaactcaacacgaaagtgagagcaatgaaaaggaaataatccatgttcaagagaaactttactttc |
42444340 |
T |
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| Q |
520 |
tgcttgatggaagaatgaaagaggtgtgctcta----aatacattcacaatgattatatatttatatgtaactttgtaagtaacactt |
603 |
Q |
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|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42444339 |
tgcttgatggaagaatgaaagaagtgtgctctaaataaatacattcacaatgattatatatttatatgtaactttgtaagtaacactt |
42444252 |
T |
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