View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11280A_low_40 (Length: 370)
Name: NF11280A_low_40
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_40 |
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Alignment Details
Target: chr8 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Complemental strand, 33460227 - 33459868
Alignment:
| Q |
1 |
agagtggaggggacgaacctgatttctggaaaggccagtctgtcttgctaagagatgcttatctgcatcactcgggtacctgaggaaagagaccagaaaa |
100 |
Q |
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| T |
33460227 |
agagtggaggggacgaacctgatttctggaaaggccagtctgtcttgctaagagatgcttatctgcatcactcgggtacctgaggaaagagaccagaaaa |
33460128 |
T |
|
| Q |
101 |
tgacatcacactcattacccttaaccgtataaacacacattcacctttctctaatattactatacattcaatttatatcatatcataacatttctttctg |
200 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33460127 |
tgacatcacactcatttcccttaaccgtataaacacacattcacctttctctaatattactatacattcaatttatatcatatcataacatttctttctg |
33460028 |
T |
|
| Q |
201 |
tctgtctccctggcgtgacaatctatgatatgaaattaactactatactttatttatcaatgttaaattaattgcagttaaaacaggtgaatattgaaga |
300 |
Q |
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| T |
33460027 |
tctgtctccctggcgtgacaatctatgatatgaaattaactactatactttatttatcaatgttaaattaattgcagttaaaacaggtgaatattgaaga |
33459928 |
T |
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| Q |
301 |
agacttattcattcattcatgcatctttacagcttttatagtagtgagttattaacatcccagg |
364 |
Q |
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| T |
33459927 |
agacttattcat----tcatgcatctttacagcttttatagtagtgagttattaacatcccagg |
33459868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 133
Target Start/End: Original strand, 7061953 - 7062074
Alignment:
| Q |
13 |
acgaacctgatttctggaaaggccagtctgtcttgctaagagatgcttatctgcatcactcgggtacctgaggaaagagacc---agaaaatgacatcac |
109 |
Q |
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| T |
7061953 |
acgaacctgatttcgtgatagcccagtttgtcgtgccaatagatgcttatctgcatcacttggatacctga-gaaagagaccaaaagaaaatgacatcaa |
7062051 |
T |
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| Q |
110 |
actcattacccttaaccgtataaa |
133 |
Q |
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| || || ||||||||| |||||| |
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| T |
7062052 |
agtcctt-cccttaaccatataaa |
7062074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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