View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11280A_low_42 (Length: 369)
Name: NF11280A_low_42
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_42 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 12 - 369
Target Start/End: Complemental strand, 51961295 - 51960934
Alignment:
| Q |
12 |
aatattgcatggttgttcaatgatgttatatcacacgtttgaatgttgtgactctatcactatagtactatgctcgagttgtaaataacaaaatccaaat |
111 |
Q |
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| T |
51961295 |
aatattgcatggttgttcaatgatgttatatcacatgtttgaatgttgtgactctatcactatagtactatgctcgagttgtaaataagaaaatccaaat |
51961196 |
T |
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| Q |
112 |
ccttgagaaagtaataaatttacatcattacaaaaggatcgatgt----tgttctgtcaataagaaagactctgcttaaattaaaggtgtagctttccat |
207 |
Q |
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| T |
51961195 |
ccttgagaaagtaataaatttacatcattacaaaaggatcgatgtacgttgctctatcaataagaaagactctggttaaattaaaggtgtagctttccat |
51961096 |
T |
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| Q |
208 |
cctctcctagatcacggaagcagattctactctctcgtctcaaagtctaaatctattagacacataatttcgtcatatacaccgaagaagattcttcact |
307 |
Q |
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| T |
51961095 |
cctctcctagatcacggaagcagattctactcttttgtctcaaagtctaaatctattagacacataatttcgtcatatacaccgaagaagattcttcact |
51960996 |
T |
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| Q |
308 |
ttgagcaaaaaccttcaacttcttgtttaagtgtcaatttctggtgacatgcaacagtgtag |
369 |
Q |
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| T |
51960995 |
ttgagcaaaaaccttcaacttcttgtttaagtgtcaatttctggtgacatgcaacagtgtag |
51960934 |
T |
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