View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11280A_low_44 (Length: 367)

Name: NF11280A_low_44
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11280A_low_44
NF11280A_low_44
[»] chr4 (33 HSPs)
chr4 (104-362)||(28987941-28988199)
chr4 (8-107)||(28988456-28988555)
chr4 (8-91)||(32728356-32728439)
chr4 (8-89)||(41878407-41878488)
chr4 (8-92)||(1771284-1771368)
chr4 (11-90)||(41847971-41848050)
chr4 (8-90)||(55272394-55272476)
chr4 (8-92)||(711958-712042)
chr4 (8-100)||(17619170-17619262)
chr4 (10-92)||(960890-960972)
chr4 (8-70)||(41327561-41327623)
chr4 (8-93)||(27864561-27864646)
chr4 (8-93)||(55966364-55966449)
chr4 (8-92)||(25051691-25051775)
chr4 (8-92)||(33703139-33703223)
chr4 (8-80)||(38851523-38851595)
chr4 (8-80)||(48435597-48435669)
chr4 (302-353)||(15606457-15606507)
chr4 (302-353)||(15606809-15606859)
chr4 (8-90)||(35017733-35017814)
chr4 (8-80)||(43949819-43949892)
chr4 (8-80)||(3756264-3756336)
chr4 (8-76)||(27316731-27316799)
chr4 (8-68)||(27893860-27893920)
chr4 (8-68)||(39631123-39631183)
chr4 (8-80)||(43735752-43735824)
chr4 (8-96)||(46827724-46827812)
chr4 (8-91)||(48463468-48463551)
chr4 (190-233)||(54152277-54152320)
chr4 (8-93)||(23035977-23036062)
chr4 (8-93)||(35037002-35037087)
chr4 (10-91)||(49229684-49229765)
chr4 (10-90)||(27550309-27550389)
[»] chr5 (16 HSPs)
chr5 (191-362)||(41741261-41741432)
chr5 (112-278)||(2431021-2431186)
chr5 (114-221)||(26658662-26658769)
chr5 (114-221)||(26930251-26930358)
chr5 (8-91)||(17208073-17208156)
chr5 (8-90)||(41334681-41334763)
chr5 (8-93)||(7617130-7617215)
chr5 (8-92)||(33801467-33801551)
chr5 (22-90)||(33855075-33855143)
chr5 (8-90)||(2614667-2614749)
chr5 (8-94)||(5256991-5257077)
chr5 (8-93)||(30622737-30622821)
chr5 (8-92)||(18033980-18034064)
chr5 (12-92)||(38470577-38470657)
chr5 (299-362)||(22477262-22477324)
chr5 (42-80)||(25915039-25915077)
[»] chr1 (21 HSPs)
chr1 (190-362)||(292388-292560)
chr1 (8-92)||(44112675-44112759)
chr1 (8-90)||(43571104-43571186)
chr1 (8-90)||(38335918-38336000)
chr1 (8-90)||(48119628-48119710)
chr1 (8-91)||(38113213-38113296)
chr1 (8-91)||(41065152-41065235)
chr1 (8-90)||(35003294-35003376)
chr1 (12-90)||(37814778-37814856)
chr1 (8-93)||(5489773-5489858)
chr1 (8-96)||(750323-750411)
chr1 (302-362)||(35535515-35535574)
chr1 (8-91)||(45427763-45427846)
chr1 (8-91)||(45705824-45705907)
chr1 (8-92)||(45639750-45639834)
chr1 (9-92)||(26585460-26585543)
chr1 (299-362)||(35574176-35574238)
chr1 (8-90)||(46168383-46168465)
chr1 (8-80)||(4401337-4401410)
chr1 (8-80)||(7447836-7447907)
chr1 (8-92)||(48498980-48499064)
[»] chr2 (27 HSPs)
chr2 (114-277)||(25665375-25665539)
chr2 (190-362)||(23357522-23357694)
chr2 (8-89)||(34817794-34817875)
chr2 (8-96)||(43114551-43114639)
chr2 (8-92)||(16803966-16804050)
chr2 (8-92)||(16843248-16843332)
chr2 (8-80)||(41281992-41282064)
chr2 (8-90)||(12415478-12415560)
chr2 (8-90)||(12427538-12427620)
chr2 (8-80)||(11825672-11825744)
chr2 (8-68)||(13780753-13780813)
chr2 (8-92)||(966852-966936)
chr2 (8-96)||(18491699-18491787)
chr2 (8-92)||(43335781-43335865)
chr2 (8-93)||(34895759-34895844)
chr2 (8-80)||(6518487-6518558)
chr2 (8-91)||(30838631-30838714)
chr2 (8-90)||(1750414-1750496)
chr2 (8-78)||(4299438-4299508)
chr2 (8-94)||(12302271-12302357)
chr2 (11-80)||(33229311-33229381)
chr2 (22-90)||(16096747-16096815)
chr2 (8-74)||(4451968-4452034)
chr2 (10-80)||(7070426-7070496)
chr2 (8-89)||(19047158-19047239)
chr2 (8-80)||(8896601-8896673)
chr2 (184-280)||(9989260-9989356)
[»] chr3 (30 HSPs)
chr3 (109-280)||(35424551-35424722)
chr3 (154-278)||(8426516-8426640)
chr3 (265-362)||(16250904-16251000)
chr3 (155-280)||(30812256-30812380)
chr3 (8-90)||(42100688-42100770)
chr3 (8-93)||(9434121-9434206)
chr3 (8-93)||(46941050-46941135)
chr3 (8-78)||(11064740-11064810)
chr3 (302-362)||(23493448-23493507)
chr3 (8-92)||(47191044-47191127)
chr3 (8-91)||(25996267-25996350)
chr3 (8-90)||(34791829-34791911)
chr3 (8-90)||(45126946-45127028)
chr3 (8-92)||(10457910-10457994)
chr3 (8-92)||(40808863-40808947)
chr3 (8-92)||(53273702-53273786)
chr3 (8-94)||(24688420-24688506)
chr3 (8-93)||(4190283-4190368)
chr3 (8-89)||(54237097-54237178)
chr3 (8-93)||(54246166-54246251)
chr3 (8-80)||(27748573-27748645)
chr3 (265-345)||(45199285-45199364)
chr3 (8-80)||(53581876-53581948)
chr3 (8-91)||(25413680-25413763)
chr3 (8-78)||(29558252-29558322)
chr3 (8-90)||(36150130-36150212)
chr3 (8-89)||(40480750-40480831)
chr3 (8-89)||(42394437-42394518)
chr3 (8-92)||(52627995-52628079)
chr3 (304-344)||(53074190-53074230)
[»] chr8 (20 HSPs)
chr8 (198-362)||(29022515-29022679)
chr8 (8-92)||(34304786-34304870)
chr8 (8-94)||(35181512-35181598)
chr8 (8-90)||(29705362-29705444)
chr8 (8-93)||(33630011-33630096)
chr8 (8-93)||(42295192-42295277)
chr8 (8-96)||(16603644-16603732)
chr8 (8-93)||(36743501-36743586)
chr8 (184-280)||(36646807-36646903)
chr8 (8-90)||(11582766-11582848)
chr8 (8-80)||(40528652-40528725)
chr8 (8-80)||(1375552-1375624)
chr8 (8-96)||(5754897-5754985)
chr8 (8-68)||(29800968-29801028)
chr8 (302-362)||(36114644-36114703)
chr8 (10-93)||(30660762-30660845)
chr8 (8-70)||(16358851-16358913)
chr8 (8-80)||(20148770-20148842)
chr8 (303-343)||(22937562-22937602)
chr8 (8-80)||(26125645-26125717)
[»] chr6 (16 HSPs)
chr6 (8-96)||(7367543-7367631)
chr6 (13-96)||(31109245-31109328)
chr6 (12-101)||(3213389-3213478)
chr6 (8-93)||(26670027-26670112)
chr6 (8-92)||(33242401-33242485)
chr6 (8-94)||(7273353-7273439)
chr6 (8-90)||(33253913-33253995)
chr6 (8-93)||(7292744-7292829)
chr6 (8-91)||(9698351-9698434)
chr6 (8-90)||(13743239-13743321)
chr6 (8-90)||(13748739-13748821)
chr6 (8-93)||(26466796-26466881)
chr6 (299-362)||(16543553-16543615)
chr6 (299-362)||(17834521-17834583)
chr6 (12-91)||(21293699-21293778)
chr6 (8-80)||(27441552-27441624)
[»] chr7 (20 HSPs)
chr7 (8-91)||(43317442-43317525)
chr7 (8-94)||(40236915-40237001)
chr7 (8-91)||(5194249-5194332)
chr7 (8-93)||(33384867-33384953)
chr7 (302-362)||(19095462-19095521)
chr7 (8-91)||(35069720-35069803)
chr7 (299-362)||(3750122-3750186)
chr7 (8-96)||(24280614-24280702)
chr7 (8-80)||(43343642-43343714)
chr7 (8-80)||(44416952-44417024)
chr7 (8-90)||(5810942-5811024)
chr7 (8-90)||(24001030-24001112)
chr7 (8-90)||(31513287-31513369)
chr7 (10-68)||(32029837-32029895)
chr7 (8-90)||(42538449-42538531)
chr7 (8-90)||(42972852-42972934)
chr7 (8-80)||(10573759-10573831)
chr7 (8-93)||(5015392-5015477)
chr7 (8-80)||(44326188-44326260)
chr7 (8-68)||(45326042-45326102)
[»] scaffold0119 (1 HSPs)
scaffold0119 (8-93)||(682-767)
[»] scaffold0385 (1 HSPs)
scaffold0385 (8-92)||(11249-11333)
[»] scaffold0100 (1 HSPs)
scaffold0100 (8-90)||(35474-35556)
[»] scaffold0961 (1 HSPs)
scaffold0961 (299-362)||(789-851)
[»] scaffold0038 (1 HSPs)
scaffold0038 (8-89)||(112656-112737)
[»] scaffold0003 (1 HSPs)
scaffold0003 (8-80)||(45737-45809)


Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 104 - 362
Target Start/End: Complemental strand, 28988199 - 28987941
Alignment:
Q  104 agtataacttagtgtgtgtttgggaacacgttttcaaagaccaaactggagtttactttttcaaaccacgtttccaggcatttcagtttgtttgggtgaa 203  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28988199 agtataacttagtgtgtgtttgggaacacgttttcaaagaacaaactggagtttactttttcaaaccacgtttccaggcatttcagtttgtttgggtgaa 28988100  T
Q  204 tgaaaagcactttcaaaaaactcagttttgaaacaaaaacgccggtacagttaaagcaggaattcctagcttctgcggtagagaaaacgcaagtacaacc 303  Q
    |||||||||||| ||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  28988099 tgaaaagcacttccaaaaaactcaattttgagacaaaaacgcaggtacagttaaagcaggaattcctagcttctgcggtagagaaaacgcaggtacaacc 28988000  T
Q  304 tttaatttctcaagtggcaggtactttacctaattacccataaattcaagtctccaatt 362  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28987999 tttaatttctcaagtggcaggtactttacctaattacccataaattcaagtctccaatt 28987941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 8 - 107
Target Start/End: Complemental strand, 28988555 - 28988456
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttcctttaaagaaagtaagta 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||  |||||||||||||||||||||||||    
T  28988555 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaagggtgttcatgtaacattttcctttaaagaaagtaagta 28988456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 91
Target Start/End: Complemental strand, 32728439 - 32728356
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttcct 91  Q
    |||||||||||||  ||||||||| || |||||||||||||||||  ||||||||| ||||||||||||||||  |||||||||    
T  32728439 tgagatgaatttactaaaatgtccttaatgcatggggtgtacaatagggtgtatgattaaaggatgttcatgtaacattttcct 32728356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 41878488 - 41878407
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttc 89  Q
    ||||||||| |||||||||| |||||| || || ||||||||||||||||||||||||||||  |||||||||  |||||||    
T  41878488 tgagatgaacttatcaaaatatccctaatggatagggtgtacaatgaggtgtatgaataaagagtgttcatgtaacattttc 41878407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 8 - 92
Target Start/End: Original strand, 1771284 - 1771368
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttcctt 92  Q
    ||||||||| |||||||||| || ||| | |||||||||||||||| |||||| ||||||||| |||||||||  ||||||||||    
T  1771284 tgagatgaacttatcaaaatatctctaatacatggggtgtacaatggggtgtaggaataaagggtgttcatgtaacattttcctt 1771368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 11 - 90
Target Start/End: Complemental strand, 41848050 - 41847971
Alignment:
Q  11 gatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttcc 90  Q
    |||||||||  ||||||||| ||| |||||||||||||||||||||||| |||| ||||||||||| |||  ||||||||    
T  41848050 gatgaatttgccaaaatgtctctaatgcatggggtgtacaatgaggtgtgtgaaaaaaggatgttcttgtaacattttcc 41847971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 90
Target Start/End: Original strand, 55272394 - 55272476
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttcc 90  Q
    ||||||||||||| |||||| ||| || |||||||||||||||||   |||||||| ||||||||||||||||  ||||||||    
T  55272394 tgagatgaatttaccaaaatatccttaatgcatggggtgtacaatagagtgtatgattaaaggatgttcatgtaacattttcc 55272476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 92
Target Start/End: Complemental strand, 712042 - 711958
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttcctt 92  Q
    ||||||||||||| |||||| ||| || ||||| |||||||||||  ||||||||| |||||| |||||||||  ||||||||||    
T  712042 tgagatgaatttaccaaaatatccttaatgcatagggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcctt 711958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 100
Target Start/End: Original strand, 17619170 - 17619262
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttcctttaaagaaa 100  Q
    ||||||||||||| |||||| ||| || |||||||||||||||||  ||||||||| |||| | |||||||||  |||||||| | |||||||    
T  17619170 tgagatgaatttaccaaaatatccttaatgcatggggtgtacaatagggtgtatgattaaaaggtgttcatgtaacattttccataaaagaaa 17619262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 10 - 92
Target Start/End: Original strand, 960890 - 960972
Alignment:
Q  10 agatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttcctt 92  Q
    ||||||||||| ||||||||||||| || || |||||||||||   |||||||| |||||| |||||||||  ||||||||||    
T  960890 agatgaatttaccaaaatgtccctaatgtatagggtgtacaatagagtgtatgattaaagggtgttcatgtaacattttcctt 960972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 41327561 - 41327623
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaagg 70  Q
    ||||||||||||| |||||||||| ||||||||  ||||||||||| ||||| ||||||||||    
T  41327561 tgagatgaatttaccaaaatgtccgtagtgcataaggtgtacaatggggtgtgtgaataaagg 41327623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 27864646 - 27864561
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttccttt 93  Q
    ||||||||| ||| |||||| |||||| | |||||||||||||||| | |||||||||||| | |||| ||||  |||||||||||    
T  27864646 tgagatgaacttaccaaaatatccctaatacatggggtgtacaatgggatgtatgaataaatggtgtttatgtaacattttccttt 27864561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 93
Target Start/End: Original strand, 55966364 - 55966449
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttccttt 93  Q
    ||||||||| ||| |||||| |||||| | |||||| ||||||||| | |||||||||||||| |||| ||||  |||||||||||    
T  55966364 tgagatgaacttaccaaaatatccctaatacatgggatgtacaatgggatgtatgaataaagggtgtttatgtaacattttccttt 55966449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 8 - 92
Target Start/End: Complemental strand, 25051775 - 25051691
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttcctt 92  Q
    ||||||||| ||| |||||| |||||| | ||| |||||||||||| |||||| ||||||||  |||||||||  ||||||||||    
T  25051775 tgagatgaacttaccaaaatatccctaatacatagggtgtacaatggggtgtaggaataaagtgtgttcatgtgacattttcctt 25051691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 8 - 92
Target Start/End: Complemental strand, 33703223 - 33703139
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttcctt 92  Q
    ||||||||| ||| |||||| |||||| | ||||||||||||||| || ||||  |||||||| |||||||||  ||||||||||    
T  33703223 tgagatgaacttaccaaaatatccctaatacatggggtgtacaataagatgtagaaataaagggtgttcatgtaacattttcctt 33703139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 8 - 80
Target Start/End: Complemental strand, 38851595 - 38851523
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgt 80  Q
    |||||||||||||||||||||||| || ||||||| ||||||| |  | ||||||| |||||||| |||||||    
T  38851595 tgagatgaatttatcaaaatgtccataatgcatggagtgtacattatgatgtatgattaaaggatattcatgt 38851523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 8 - 80
Target Start/End: Original strand, 48435597 - 48435669
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgt 80  Q
    ||||||||||||| ||| ||||||||| |||||||||||||||||  ||||| ||| |||| | |||||||||    
T  48435597 tgagatgaatttaccaatatgtccctaatgcatggggtgtacaatagggtgtgtgattaaatggtgttcatgt 48435669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 302 - 353
Target Start/End: Original strand, 15606457 - 15606507
Alignment:
Q  302 cctttaatttctcaagtggcaggtactttacctaattacccataaattcaag 353  Q
    |||||||||||||||||||||||||| |||||||||||||  ||||||||||    
T  15606457 cctttaatttctcaagtggcaggtac-ttacctaattacctctaaattcaag 15606507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 302 - 353
Target Start/End: Original strand, 15606809 - 15606859
Alignment:
Q  302 cctttaatttctcaagtggcaggtactttacctaattacccataaattcaag 353  Q
    |||||||||||||||||||||||||| |||||||||||||  ||||||||||    
T  15606809 cctttaatttctcaagtggcaggtac-ttacctaattacctctaaattcaag 15606859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 90
Target Start/End: Complemental strand, 35017814 - 35017733
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttcc 90  Q
    ||||||||| ||| |||||| |||||| | |||||||||||||||||| | || ||||||||| |||||||||  ||||||||    
T  35017814 tgagatgaacttaccaaaatatcccta-tacatggggtgtacaatgagatataggaataaagggtgttcatgtaacattttcc 35017733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 80
Target Start/End: Original strand, 43949819 - 43949892
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaat-aaaggatgttcatgt 80  Q
    ||||||||| ||| |||||| |||||| | ||||||||||||||||||||| | |||| ||||| |||||||||    
T  43949819 tgagatgaacttaccaaaatatccctaatacatggggtgtacaatgaggtgcaggaataaaagggtgttcatgt 43949892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 80
Target Start/End: Original strand, 3756264 - 3756336
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgt 80  Q
    |||||| ||||||  ||||| ||| || |||||||||||||||||  ||||||||| |||||| |||||||||    
T  3756264 tgagataaatttactaaaatatccttaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgt 3756336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 27316731 - 27316799
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttc 76  Q
    ||||||||| ||| |||||| ||| || | ||||||||||| ||||||||||| ||||||||| |||||    
T  27316731 tgagatgaacttaccaaaatatccttaatacatggggtgtataatgaggtgtaggaataaagggtgttc 27316799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 27893860 - 27893920
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaa 68  Q
    ||||||||| ||| |||||| |||||| | |||||||||||||||| | ||||||||||||    
T  27893860 tgagatgaaattaccaaaatatccctaatacatggggtgtacaatgggatgtatgaataaa 27893920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 39631183 - 39631123
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaa 68  Q
    ||||||||| ||| |||||| |||||| | |||| |||||||||||||||||| |||||||    
T  39631183 tgagatgaacttaccaaaatatccctaatacatgaggtgtacaatgaggtgtaggaataaa 39631123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 80
Target Start/End: Complemental strand, 43735824 - 43735752
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgt 80  Q
    ||||||||| |||||||||| || ||| | |||||  |||| |||||| |||| |||||||||||||||||||    
T  43735824 tgagatgaacttatcaaaatatctctaatacatggaatgtataatgagatgtaggaataaaggatgttcatgt 43735752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 96
Target Start/End: Original strand, 46827724 - 46827812
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttcctttaaa 96  Q
    |||||| |||||| ||||| || | || ||||| |||||||||||   |||||||| |||||| |||||||||  ||||||||||||||    
T  46827724 tgagataaatttaccaaaacgttcttaatgcattgggtgtacaatagagtgtatgattaaagggtgttcatgtaacattttcctttaaa 46827812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 91
Target Start/End: Original strand, 48463468 - 48463551
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttcct 91  Q
    ||||||||| ||| |||||| |||||| | |||||| ||||||||||  |||||||||||| | |||| ||||  |||||||||    
T  48463468 tgagatgaacttaccaaaatatccctaatacatgggatgtacaatgaaatgtatgaataaatggtgtttatgtaacattttcct 48463551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 190 - 233
Target Start/End: Original strand, 54152277 - 54152320
Alignment:
Q  190 tttgtttgggtgaatgaaaagcactttcaaaaaactcagttttg 233  Q
    ||||||||||||||||||||| |||||||  |||||||||||||    
T  54152277 tttgtttgggtgaatgaaaagtactttcaggaaactcagttttg 54152320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 23036062 - 23035977
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttccttt 93  Q
    ||||||||| |||  ||||| |||||| |  || |||||||||||  |||||| |||||||||| ||||||||  |||||||||||    
T  23036062 tgagatgaacttacaaaaatatccctaatatatagggtgtacaatagggtgtaggaataaaggaggttcatgtaacattttccttt 23035977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 35037087 - 35037002
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttccttt 93  Q
    ||||||||||||| |||||| ||| || |||||||||||||||||   |||||||  |||||| || ||||||  |||||| ||||    
T  35037087 tgagatgaatttaccaaaatatccttaatgcatggggtgtacaatagagtgtatggttaaagggtgctcatgtaacatttttcttt 35037002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 91
Target Start/End: Original strand, 49229684 - 49229765
Alignment:
Q  10 agatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttcct 91  Q
    ||||||||||| || ||| ||| || ||||||  |||||||||  ||||||||| |||||||||||||| |  |||||||||    
T  49229684 agatgaatttaccagaatatccttaatgcatgaagtgtacaatagggtgtatgattaaaggatgttcatataacattttcct 49229765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 27550389 - 27550309
Alignment:
Q  10 agatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttcc 90  Q
    ||||||| ||| |||||| |||||| | |||| |||||||||||  |||||  |||||||| |||||||||  ||||||||    
T  27550389 agatgaacttaccaaaatatccctaatacatgaggtgtacaatggagtgtagaaataaagggtgttcatgtaacattttcc 27550309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 112; Significance: 1e-56; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 191 - 362
Target Start/End: Complemental strand, 41741432 - 41741261
Alignment:
Q  191 ttgtttgggtgaatgaaaagcactttcaaaaaactcagttttgaaacaaaaacgccggtacagttaaagcaggaattcctagcttctgcggtagagaaaa 290  Q
    ||||||||||||||||||||| ||| |||||||||||||||||| || ||||||| ||||||  ||||||||||||||||||||||| || |||||||||    
T  41741432 ttgtttgggtgaatgaaaagcgcttccaaaaaactcagttttgagaccaaaacgcaggtacaactaaagcaggaattcctagcttctacgttagagaaaa 41741333  T
Q  291 cgcaagtacaacctttaatttctcaagtggcaggtactttacctaattacccataaattcaagtctccaatt 362  Q
    | || ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| || |||||    
T  41741332 cacaggtacaacctataatttctcaagtggcaggtactttaccaaattacccataaattcaagccttcaatt 41741261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 112 - 278
Target Start/End: Complemental strand, 2431186 - 2431021
Alignment:
Q  112 ttagtgtgtgtttgggaacacgttttcaaagaccaaactggagtttactttttcaaaccacgtttccaggcatttcagtttgtttgggtgaatgaaaagc 211  Q
    ||||||||||||||||||||||||||||| | ||||||    |||||||||||||| |||||||| |||  ||||||| |||||||| ||||||||||||    
T  2431186 ttagtgtgtgtttgggaacacgttttcaagggccaaaccaccgtttactttttcaacccacgttttcagagatttcagcttgtttggatgaatgaaaagc 2431087  T
Q  212 actttcaaaaaactcagttttgaaacaaaaacgccggtacagttaaagcaggaattcctagcttctg 278  Q
     ||| |||||| ||||||||||| || ||||||||||||||| ||||||||||||||||||||||||    
T  2431086 gcttccaaaaa-ctcagttttgagaccaaaacgccggtacagctaaagcaggaattcctagcttctg 2431021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 114 - 221
Target Start/End: Complemental strand, 26658769 - 26658662
Alignment:
Q  114 agtgtgtgtttgggaacacgttttcaaagaccaaactggagtttactttttcaaaccacgtttccaggcatttcagtttgtttgggtgaatgaaaagcac 213  Q
    ||||||||||||| ||||||||||||| | | ||| ||  |||||||||||||| |||||||| |||  ||||||| |||||||| |||||||||||| |    
T  26658769 agtgtgtgtttggaaacacgttttcaagggctaaattgacgtttactttttcaacccacgttttcagagatttcagcttgtttggatgaatgaaaagcgc 26658670  T
Q  214 tttcaaaa 221  Q
     |||||||    
T  26658669 attcaaaa 26658662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 114 - 221
Target Start/End: Complemental strand, 26930358 - 26930251
Alignment:
Q  114 agtgtgtgtttgggaacacgttttcaaagaccaaactggagtttactttttcaaaccacgtttccaggcatttcagtttgtttgggtgaatgaaaagcac 213  Q
    ||||||||||||| ||||||||||||| | | ||| ||  |||||||||||||| |||||||| |||  ||||||| |||||||| |||||||||||| |    
T  26930358 agtgtgtgtttggaaacacgttttcaagggctaaattgacgtttactttttcaacccacgttttcagagatttcagcttgtttggatgaatgaaaagcgc 26930259  T
Q  214 tttcaaaa 221  Q
     |||||||    
T  26930258 attcaaaa 26930251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 8 - 91
Target Start/End: Complemental strand, 17208156 - 17208073
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttcct 91  Q
    ||||||||||||| |||||||||| || ||||||||||||||||| | |||||||| |||||| |||||| ||  |||||||||    
T  17208156 tgagatgaatttaccaaaatgtccttaatgcatggggtgtacaataaagtgtatgattaaagggtgttcacgtaacattttcct 17208073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 90
Target Start/End: Original strand, 41334681 - 41334763
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttcc 90  Q
    ||||||||| ||| |||||| |||||| | ||| ||||||| ||||||||||||||||||||| |||||||||  ||||||||    
T  41334681 tgagatgaacttaccaaaatatccctaatacatagggtgtataatgaggtgtatgaataaagggtgttcatgtaacattttcc 41334763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 7617215 - 7617130
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttccttt 93  Q
    ||||||||| ||| |||||| |||||| | ||||||||||| ||||  ||||||||||||||| |||||||||  |||||||||||    
T  7617215 tgagatgaacttaccaaaatatccctaatacatggggtgtataatggagtgtatgaataaagggtgttcatgtaacattttccttt 7617130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 8 - 92
Target Start/End: Complemental strand, 33801551 - 33801467
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttcctt 92  Q
    ||||||||| |||  ||||| |||||| | ||||| |||||||||| ||||||  ||||||||||||||||||  ||||||||||    
T  33801551 tgagatgaacttactaaaatatccctaatacatggagtgtacaatggggtgtagaaataaaggatgttcatgtaacattttcctt 33801467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 33855075 - 33855143
Alignment:
Q  22 caaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttcc 90  Q
    |||||||| |||| | |||||||||||||||| |||||| ||||||||| |||||||||  ||||||||    
T  33855075 caaaatgttcctaatacatggggtgtacaatggggtgtaggaataaagggtgttcatgtaacattttcc 33855143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 90
Target Start/End: Original strand, 2614667 - 2614749
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttcc 90  Q
    ||||||||| ||| |||||| |||||| | ||| |||||||||||| | |||| ||||||||| |||||||||  ||||||||    
T  2614667 tgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttcc 2614749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 5257077 - 5256991
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttccttta 94  Q
    ||||||||| ||| |||||| |||||| | |||||||||||||||| | |||||||||||| | |||| ||||  |||||| |||||    
T  5257077 tgagatgaaattaccaaaatatccctaatacatggggtgtacaatgggatgtatgaataaatggtgtttatgtaacatttttcttta 5256991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 93
Target Start/End: Original strand, 30622737 - 30622821
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttccttt 93  Q
    |||||| |||||| |||||| ||| || |||||||| | ||||||  ||||||||| ||||||||||||||||  |||||||||||    
T  30622737 tgagataaatttaccaaaatatccttaatgcatgggct-tacaatagggtgtatgattaaaggatgttcatgtaacattttccttt 30622821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 92
Target Start/End: Complemental strand, 18034064 - 18033980
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttcctt 92  Q
    ||||||||| |||  ||||| |||||| | ||| ||||||||||||  ||||| ||||||||| |||||||||  ||||||||||    
T  18034064 tgagatgaacttacaaaaatatccctaatacatagggtgtacaatggagtgtaggaataaagggtgttcatgtaacattttcctt 18033980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 38470657 - 38470577
Alignment:
Q  12 atgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttcctt 92  Q
    ||||||||| |||||| ||| || | ||||||||||||||||   |||||||||||||| |||| ||||  ||||||||||    
T  38470657 atgaatttaccaaaatatccttaatacatggggtgtacaatggaatgtatgaataaagggtgtttatgtaacattttcctt 38470577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 362
Target Start/End: Original strand, 22477262 - 22477324
Alignment:
Q  299 caacctttaatttctcaagtggcaggtactttacctaattacccataaattcaagtctccaatt 362  Q
    ||||||||||||||||||| | || |||||| |||||||||||| |||||||||| || |||||    
T  22477262 caacctttaatttctcaagggacaagtactt-acctaattacccctaaattcaagccttcaatt 22477324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 80
Target Start/End: Original strand, 25915039 - 25915077
Alignment:
Q  42 gggtgtacaatgaggtgtatgaataaaggatgttcatgt 80  Q
    ||||||||||||||||||| ||||||||| |||||||||    
T  25915039 gggtgtacaatgaggtgtaggaataaagggtgttcatgt 25915077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 101; Significance: 5e-50; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 190 - 362
Target Start/End: Complemental strand, 292560 - 292388
Alignment:
Q  190 tttgtttgggtgaatgaaaagcactttcaaaaaactcagttttgaaacaaaaacgccggtacagttaaagcaggaattcctagcttctgcggtagagaaa 289  Q
    |||||||||||||||||||||| ||| |||||||||||||||||| || ||||||| |||| || ||||||||||||||||||||||| |  ||||||||    
T  292560 tttgtttgggtgaatgaaaagcgcttccaaaaaactcagttttgagaccaaaacgcaggtatagctaaagcaggaattcctagcttctacattagagaaa 292461  T
Q  290 acgcaagtacaacctttaatttctcaagtggcaggtactttacctaattacccataaattcaagtctccaatt 362  Q
     | || |||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||| || |||||    
T  292460 gcacaggtacaacctcaaatttctcaagtggcaggtactttaccaaattacccataaattcaagccttcaatt 292388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 8 - 92
Target Start/End: Complemental strand, 44112759 - 44112675
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttcctt 92  Q
    ||||||||| ||| ||||||||||||| |||||||||||||||||  ||||||||| |||||| |||||||||  ||||||||||    
T  44112759 tgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcctt 44112675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 8 - 90
Target Start/End: Original strand, 43571104 - 43571186
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttcc 90  Q
    ||||||||| ||| |||||| |||||| | ||||||||||||||||||||||| ||||||||| |||||||||  ||||||||    
T  43571104 tgagatgaacttaccaaaatatccctaatacatggggtgtacaatgaggtgtaggaataaagggtgttcatgtaacattttcc 43571186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 90
Target Start/End: Complemental strand, 38336000 - 38335918
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttcc 90  Q
    ||||||||||||| |||||| ||| || |||||||| |||||||| |||||||||| |||||| |||||||||  ||||||||    
T  38336000 tgagatgaatttaccaaaatatccttaatgcatgggatgtacaataaggtgtatgattaaagggtgttcatgtaacattttcc 38335918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 90
Target Start/End: Complemental strand, 48119710 - 48119628
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttcc 90  Q
    ||||||||||||| |||||| ||| || |||||||||||||||||  ||||||||| |||||| |||||||||  ||||||||    
T  48119710 tgagatgaatttaccaaaatatccttaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 48119628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 91
Target Start/End: Original strand, 38113213 - 38113296
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttcct 91  Q
    ||||||||||||| |||||||||  || |||||||||||||||||  ||||||||| |||||| ||||||| |  |||||||||    
T  38113213 tgagatgaatttaccaaaatgtcattaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatataacattttcct 38113296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 91
Target Start/End: Complemental strand, 41065235 - 41065152
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttcct 91  Q
    ||||||||| ||| ||||||| ||||| ||||||||||||||||   ||||||||| |||||| |||||||||  |||||||||    
T  41065235 tgagatgaaattaccaaaatgcccctaatgcatggggtgtacaacagggtgtatgattaaagggtgttcatgtaacattttcct 41065152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 8 - 90
Target Start/End: Complemental strand, 35003376 - 35003294
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttcc 90  Q
    ||||||||||||| |||||| ||| || || ||||||||||||||  ||||||||| |||||| |||||||||  ||||||||    
T  35003376 tgagatgaatttaccaaaatatccttaatgtatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 35003294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 12 - 90
Target Start/End: Complemental strand, 37814856 - 37814778
Alignment:
Q  12 atgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttcc 90  Q
    ||||||||| |||||| ||| || | |||||||||||||||||| |||||||||||||| |||| ||||  ||||||||    
T  37814856 atgaatttaccaaaatatccttaatacatggggtgtacaatgagatgtatgaataaagggtgtttatgtaacattttcc 37814778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 5489858 - 5489773
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttccttt 93  Q
    ||||||||| ||| |||||| |||||| | ||| |||||||||||| | |||| ||||||||| |||||||||  |||||||||||    
T  5489858 tgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttccttt 5489773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 8 - 96
Target Start/End: Original strand, 750323 - 750411
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttcctttaaa 96  Q
    |||||||||||||||||||| |||||  | |||||||||||||||| |||||| |||  |||| |||||| ||  ||||||||| ||||    
T  750323 tgagatgaatttatcaaaatatccctgatacatggggtgtacaatggggtgtaggaaataagggtgttcacgtaacattttcctataaa 750411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 302 - 362
Target Start/End: Original strand, 35535515 - 35535574
Alignment:
Q  302 cctttaatttctcaagtggcaggtactttacctaattacccataaattcaagtctccaatt 362  Q
    |||||||||||||||||| ||||||| |||||||||||||| |||||||||| || |||||    
T  35535515 cctttaatttctcaagtgacaggtac-ttacctaattacccctaaattcaagccttcaatt 35535574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 91
Target Start/End: Original strand, 45427763 - 45427846
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttcct 91  Q
    ||||||||| ||| ||||||||||||| ||||||| |||||||||  ||||||||| |||| | | |||||||  |||||||||    
T  45427763 tgagatgaaattaccaaaatgtccctaatgcatggagtgtacaatagggtgtatgattaaaaggtattcatgtaacattttcct 45427846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 91
Target Start/End: Complemental strand, 45705907 - 45705824
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttcct 91  Q
    |||||||||||||||||||||||| || ||||||| |||||||||    ||||||| |||||| ||||||| |  |||||||||    
T  45705907 tgagatgaatttatcaaaatgtccataatgcatggagtgtacaatagaatgtatgattaaagggtgttcatataacattttcct 45705824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 92
Target Start/End: Original strand, 45639750 - 45639834
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttcctt 92  Q
    ||||||||||||| |||||| ||| || || ||||||||||||||  | ||||||| |||||  |||||||||  ||||||||||    
T  45639750 tgagatgaatttaccaaaatatccttaatgtatggggtgtacaataggatgtatgattaaagagtgttcatgtaacattttcctt 45639834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 9 - 92
Target Start/End: Complemental strand, 26585543 - 26585460
Alignment:
Q  9 gagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttcctt 92  Q
    ||||||||||||  ||||| ||| || |||||||||||||||||   |||||||| ||||| |||||||| |  ||||||||||    
T  26585543 gagatgaatttactaaaatatccttaatgcatggggtgtacaatatagtgtatgattaaagaatgttcatctaacattttcctt 26585460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 362
Target Start/End: Complemental strand, 35574238 - 35574176
Alignment:
Q  299 caacctttaatttctcaagtggcaggtactttacctaattacccataaattcaagtctccaatt 362  Q
    ||||||||||||||||||| | || |||||| |||||||||||| |||||||||| || |||||    
T  35574238 caacctttaatttctcaagggacaagtactt-acctaattacccctaaattcaagccttcaatt 35574176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 90
Target Start/End: Complemental strand, 46168465 - 46168383
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttcc 90  Q
    ||||||||||||| |||||| ||| || ||||| |||||||||||  | | ||||| |||||| |||||||||  ||||||||    
T  46168465 tgagatgaatttaccaaaatatccttaatgcattgggtgtacaataggatatatgattaaagggtgttcatgtaacattttcc 46168383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 80
Target Start/End: Complemental strand, 4401410 - 4401337
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaagga-tgttcatgt 80  Q
    ||||||||| ||| |||||| || ||| | ||||||||||||||||| ||||| ||||||| || |||||||||    
T  4401410 tgagatgaacttaccaaaatatctctaatacatggggtgtacaatgaagtgtaggaataaaagagtgttcatgt 4401337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 80
Target Start/End: Complemental strand, 7447907 - 7447836
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgt 80  Q
    ||||||||| |||||||||| ||  || | |||||| ||||||||| | |||| |||||||||||||||||||    
T  7447907 tgagatgaacttatcaaaatatctgtaatacatggg-tgtacaatgggatgtaggaataaaggatgttcatgt 7447836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 92
Target Start/End: Original strand, 48498980 - 48499064
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttcctt 92  Q
    ||||||||| ||| |||||| |||||| | |||| |||||||||||  |||||  |||||||  |||||||||  ||||||||||    
T  48498980 tgagatgaacttaccaaaatatccctaatacatgaggtgtacaatggagtgtagaaataaagagtgttcatgtaacattttcctt 48499064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 93; Significance: 3e-45; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 114 - 277
Target Start/End: Original strand, 25665375 - 25665539
Alignment:
Q  114 agtgtgtgtttgggaacacgttttcaaagaccaaactggagtttactttttcaaaccacgtttcc-aggcatttcagtttgtttgggtgaatgaaaagca 212  Q
    ||||||||||||||||||||||||||| | ||||| |||  ||||||||||||| ||||||||   ||  |||||||||||||||| ||||||||||||     
T  25665375 agtgtgtgtttgggaacacgttttcaagggccaaattggcttttactttttcaacccacgttttttagagatttcagtttgtttggatgaatgaaaagcg 25665474  T
Q  213 ctttcaaaaaactcagttttgaaacaaaaacgccggtacagttaaagcaggaattcctagcttct 277  Q
    |||||||||||||||||||||| || |||||| |||||||| |||||||||||||||||||||||    
T  25665475 ctttcaaaaaactcagttttgagaccaaaacgtcggtacagctaaagcaggaattcctagcttct 25665539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 190 - 362
Target Start/End: Original strand, 23357522 - 23357694
Alignment:
Q  190 tttgtttgggtgaatgaaaagcactttcaaaaaactcagttttgaaacaaaaacgccggtacagttaaagcaggaattcctagcttctgcggtagagaaa 289  Q
    |||||||||||||||||||||  ||| |||||||||||||||||| |  |||||||  |||||| |||| ||||||||||||| |||| || ||||||||    
T  23357522 tttgtttgggtgaatgaaaagtgcttccaaaaaactcagttttgagatcaaaacgcatgtacagctaaatcaggaattcctagtttctacgttagagaaa 23357621  T
Q  290 acgcaagtacaacctttaatttctcaagtggcaggtactttacctaattacccataaattcaagtctccaatt 362  Q
    ||||| ||||||||| |||||| |||||||||| | |||||||| ||||||||||||||||||| || |||||    
T  23357622 acgcaggtacaacctctaatttttcaagtggcaagaactttaccaaattacccataaattcaagccttcaatt 23357694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 34817794 - 34817875
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttc 89  Q
    ||||||||||||| |||||||| | ||||||||||||||||||||||||||| |||||||||| |||||||||  |||||||    
T  34817794 tgagatgaatttaccaaaatgtgcgtagtgcatggggtgtacaatgaggtgtgtgaataaagggtgttcatgtaacattttc 34817875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 96
Target Start/End: Complemental strand, 43114639 - 43114551
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttcctttaaa 96  Q
    ||||||||| ||| ||||||||||||| |||||||||||||||||  ||||||||| |||||| |||||||||  ||||||||||||||    
T  43114639 tgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcctttaaa 43114551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 8 - 92
Target Start/End: Complemental strand, 16804050 - 16803966
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttcctt 92  Q
    ||||||||| ||||||||||||||||| |||||||| ||||||||  ||||||||| |||||| |||||||||  ||||||||||    
T  16804050 tgagatgaaattatcaaaatgtccctaatgcatgggatgtacaatagggtgtatgattaaagggtgttcatgtaacattttcctt 16803966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 8 - 92
Target Start/End: Complemental strand, 16843332 - 16843248
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttcctt 92  Q
    ||||||||| ||||||||||||||||| |||||||| ||||||||  ||||||||| |||||| |||||||||  ||||||||||    
T  16843332 tgagatgaaattatcaaaatgtccctaatgcatgggatgtacaatagggtgtatgattaaagggtgttcatgtaacattttcctt 16843248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 8 - 80
Target Start/End: Original strand, 41281992 - 41282064
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgt 80  Q
    ||||||||| ||||||||||||||||| |||||||||||||||||  ||||||||| |||||| |||||||||    
T  41281992 tgagatgaaattatcaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgt 41282064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 8 - 90
Target Start/End: Original strand, 12415478 - 12415560
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttcc 90  Q
    |||||| || ||| ||||||||||||| ||||||||||||||||| |||||||||| |||||| |||||||||  ||||||||    
T  12415478 tgagataaaattaccaaaatgtccctaatgcatggggtgtacaataaggtgtatgattaaagggtgttcatgtaacattttcc 12415560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 8 - 90
Target Start/End: Original strand, 12427538 - 12427620
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttcc 90  Q
    |||||| || ||| ||||||||||||| ||||||||||||||||| |||||||||| |||||| |||||||||  ||||||||    
T  12427538 tgagataaaattaccaaaatgtccctaatgcatggggtgtacaataaggtgtatgattaaagggtgttcatgtaacattttcc 12427620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 8 - 80
Target Start/End: Original strand, 11825672 - 11825744
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgt 80  Q
    ||||||||| ||| ||||||||||||| |||||||||||||||||  ||||||||| |||||| |||||||||    
T  11825672 tgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgt 11825744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 13780753 - 13780813
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaa 68  Q
    |||||||||||||||||||| |||||| || ||||||||||||||||||||| ||||||||    
T  13780753 tgagatgaatttatcaaaatatccctaatgtatggggtgtacaatgaggtgtgtgaataaa 13780813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 92
Target Start/End: Original strand, 966852 - 966936
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttcctt 92  Q
    ||||||||||||| ||||| || | || |||||||||||||||||  ||||||||| |||||| |||||||||  ||||||||||    
T  966852 tgagatgaatttaccaaaacgttcttaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcctt 966936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 96
Target Start/End: Complemental strand, 18491787 - 18491699
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttcctttaaa 96  Q
    ||||||||||||| |||||||| | || |||||| ||||||||||  ||||||||| |||||| |||||||||  ||||||||| ||||    
T  18491787 tgagatgaatttaccaaaatgttcttaatgcatgaggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcctataaa 18491699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 92
Target Start/End: Original strand, 43335781 - 43335865
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttcctt 92  Q
    ||||||||| ||| |||||| |||||| | |||||| |||||||||||||||| ||||||| ||||||||| |  ||||||||||    
T  43335781 tgagatgaacttaccaaaatatccctaatacatgggatgtacaatgaggtgtaggaataaatgatgttcatataacattttcctt 43335865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 93
Target Start/End: Original strand, 34895759 - 34895844
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttccttt 93  Q
    ||||||||||||| ||| ||||||||| |||||||||||||||||  ||||| ||| |||| | |||||||||  || ||||||||    
T  34895759 tgagatgaatttaccaatatgtccctaatgcatggggtgtacaatagggtgtgtgattaaatggtgttcatgtaacactttccttt 34895844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 8 - 80
Target Start/End: Original strand, 6518487 - 6518558
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgt 80  Q
    ||||||||| ||| ||||||||||||| |||||||||||||||||   |||||||| |||||| |||||||||    
T  6518487 tgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagagtgtatgattaaagg-tgttcatgt 6518558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 91
Target Start/End: Complemental strand, 30838714 - 30838631
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttcct 91  Q
    ||||||||| ||| |||||| |||||| | ||||||||||||||| || ||||  |||||||| |||||||||  |||||||||    
T  30838714 tgagatgaacttaccaaaatatccctaatacatggggtgtacaataagatgtagaaataaagggtgttcatgtaacattttcct 30838631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 90
Target Start/End: Complemental strand, 1750496 - 1750414
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttcc 90  Q
    ||||||||| |||  ||||| |||||| | ||| |||||||||||| |||||| ||||||||| |||||||||  ||||||||    
T  1750496 tgagatgaacttacaaaaatatccctaatacatagggtgtacaatggggtgtaggaataaagggtgttcatgtaacattttcc 1750414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 78
Target Start/End: Original strand, 4299438 - 4299508
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcat 78  Q
    ||||||||||||| |||||||||  || ||||||| |||||||||  ||||||||| |||||| |||||||    
T  4299438 tgagatgaatttaccaaaatgtcattaatgcatggagtgtacaatagggtgtatgattaaagggtgttcat 4299508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 12302271 - 12302357
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttccttta 94  Q
    ||||||||| |||  ||||| |||||| | ||| |||||||||||| ||||||  |||||||| |||||||||  ||||||||||||    
T  12302271 tgagatgaacttacaaaaatatccctaatacatagggtgtacaatggggtgtagaaataaagggtgttcatgtaacattttccttta 12302357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 80
Target Start/End: Complemental strand, 33229381 - 33229311
Alignment:
Q  11 gatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaat-aaaggatgttcatgt 80  Q
    |||||| ||| |||||| |||||| | ||||||||||||||||||||||| |||| ||||| |||||||||    
T  33229381 gatgaacttaccaaaatatccctaatacatggggtgtacaatgaggtgtaggaataaaagggtgttcatgt 33229311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 16096815 - 16096747
Alignment:
Q  22 caaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttcc 90  Q
    |||||| |||||| | ||||||||||| |||| |||||| ||||||||| |||||||||  ||||||||    
T  16096815 caaaatatccctaatacatggggtgtataatggggtgtaggaataaagggtgttcatgtaacattttcc 16096747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 4451968 - 4452034
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgt 74  Q
    ||||||||||||| |||||| |||||| |||||  |||||||||| || ||||||| || |||||||    
T  4451968 tgagatgaatttaccaaaatatccctaatgcatatggtgtacaataagatgtatgattataggatgt 4452034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 7070496 - 7070426
Alignment:
Q  10 agatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgt 80  Q
    ||||||||||||||||||||||| | |  |||| |  ||||||| | |||||||||||||| |||||||||    
T  7070496 agatgaatttatcaaaatgtccccaataaatggaggttacaatgggatgtatgaataaagggtgttcatgt 7070426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 19047239 - 19047158
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttc 89  Q
    ||||||||| ||| |||||| |||||| | ||| ||||||||||||   |||| ||||||||| |||||||||  |||||||    
T  19047239 tgagatgaacttaccaaaatatccctaatacatagggtgtacaatggaatgtaggaataaagggtgttcatgtaacattttc 19047158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 80
Target Start/End: Original strand, 8896601 - 8896673
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgt 80  Q
    ||||||||||||| |||||| | |||| || || ||||||||||||   ||| |||||||||| |||||||||    
T  8896601 tgagatgaatttaccaaaatattcctattgtatagggtgtacaatggaatgtgtgaataaagggtgttcatgt 8896673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 280
Target Start/End: Complemental strand, 9989356 - 9989260
Alignment:
Q  184 tttcagtttgtttgggtgaatgaaaagcactttcaaaaaactcagttttgaaacaaaaacgccggtacagttaaagcaggaattcctagcttctgcg 280  Q
    |||||| |||||||||||||||||||||   | ||  |||||||||||||| || |||||||| ||   | | |||| || ||||||||||||||||    
T  9989356 tttcaggttgtttgggtgaatgaaaagcgagtccaggaaactcagttttgagaccaaaacgccagttgtgctgaagctggtattcctagcttctgcg 9989260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 92; Significance: 1e-44; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 109 - 280
Target Start/End: Original strand, 35424551 - 35424722
Alignment:
Q  109 aacttagtgtgtgtttgggaacacgttttcaaagaccaaactggagtttactttttcaaaccacgtttccaggcatttcagtttgtttgggtgaatgaaa 208  Q
    ||||||||||||||||||||||  |||||||| | |||||||||  ||||||||||||||||||||||  ||  ||| ||| ||||||||||||||||||    
T  35424551 aacttagtgtgtgtttgggaacgagttttcaatggccaaactggcttttactttttcaaaccacgtttttagatattccagcttgtttgggtgaatgaaa 35424650  T
Q  209 agcactttcaaaaaactcagttttgaaacaaaaacgccggtacagttaaagcaggaattcctagcttctgcg 280  Q
    |||||||||||||||||||||||||| || ||||||  |||| |||| ||| ||||||||||||||| ||||    
T  35424651 agcactttcaaaaaactcagttttgagaccaaaacgttggtatagttgaagtaggaattcctagcttttgcg 35424722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 154 - 278
Target Start/End: Complemental strand, 8426640 - 8426516
Alignment:
Q  154 gtttactttttcaaaccacgtttccaggcatttcagtttgtttgggtgaatgaaaagcactttcaaaaaactcagttttgaaacaaaaacgccggtacag 253  Q
    |||||||||||||| |||||||| |||  | ||||  |||||| | |||||||||||| ||| |||||||||||||||||| |  |||||||||||||||    
T  8426640 gtttactttttcaacccacgttttcagagaattcaacttgttttgatgaatgaaaagcgcttccaaaaaactcagttttgagatcaaaacgccggtacag 8426541  T
Q  254 ttaaagcaggaattcctagcttctg 278  Q
     ||||||||||||||||||||||||    
T  8426540 ctaaagcaggaattcctagcttctg 8426516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 265 - 362
Target Start/End: Complemental strand, 16251000 - 16250904
Alignment:
Q  265 attcctagcttctgcggtagagaaaacgcaagtacaacctttaatttctcaagtggcaggtactttacctaattacccataaattcaagtctccaatt 362  Q
    ||||||||||| | |||||||||||||||| || ||||||||||||| |||| |||||||||||||||||||||||| ||||||||||| || |||||    
T  16251000 attcctagcttatacggtagagaaaacgca-gtccaacctttaatttgtcaattggcaggtactttacctaattacctataaattcaagccttcaatt 16250904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 155 - 280
Target Start/End: Complemental strand, 30812380 - 30812256
Alignment:
Q  155 tttactttttcaaaccacgtttccaggcatttcagtttgtttgggtgaatgaaaagcactttcaaaaaactcagttttgaaacaaaaacgccggtacagt 254  Q
    |||||||||||||||||||||| |||  ||||||| ||||||||||||||||||||||| ||| ||||||| |||||| | |  |||| || |||||||     
T  30812380 tttactttttcaaaccacgttttcagatatttcagcttgtttgggtgaatgaaaagcac-ttccaaaaacttagttttaagatcaaaatgctggtacagc 30812282  T
Q  255 taaagcaggaattcctagcttctgcg 280  Q
    | ||| ||| ||||||||||| ||||    
T  30812281 tgaagaagggattcctagcttttgcg 30812256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 8 - 90
Target Start/End: Complemental strand, 42100770 - 42100688
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttcc 90  Q
    ||||||||| ||| |||||| |||||| | ||||||||||||||||||||||| ||||||||| |||||||||  ||||||||    
T  42100770 tgagatgaacttaccaaaatatccctaatacatggggtgtacaatgaggtgtaggaataaagggtgttcatgtaacattttcc 42100688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 9434206 - 9434121
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttccttt 93  Q
    ||||||||| ||| ||||||||||||| |||||||||||||||||   |||||||| |||||| |||||||||  |||||||||||    
T  9434206 tgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagagtgtatgattaaagggtgttcatgtaacattttccttt 9434121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 46941135 - 46941050
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttccttt 93  Q
    ||||||||| ||| |||||| |||||| | |||||||||||||||||| |||| ||||||||| |||||||||  |||||||||||    
T  46941135 tgagatgaacttaccaaaatatccctaatacatggggtgtacaatgagatgtaggaataaagggtgttcatgtaacattttccttt 46941050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 78
Target Start/End: Original strand, 11064740 - 11064810
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcat 78  Q
    ||||||||||| |||||||| || |||  |||| ||||||||||||||||||||||||||| |||||||||    
T  11064740 tgagatgaattaatcaaaatatctctaaagcatagggtgtacaatgaggtgtatgaataaatgatgttcat 11064810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 302 - 362
Target Start/End: Original strand, 23493448 - 23493507
Alignment:
Q  302 cctttaatttctcaagtggcaggtactttacctaattacccataaattcaagtctccaatt 362  Q
    |||||||||||||||||||||||||| |||||||||||||| |||||||||| || |||||    
T  23493448 cctttaatttctcaagtggcaggtac-ttacctaattacccctaaattcaagccttcaatt 23493507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 92
Target Start/End: Original strand, 47191044 - 47191127
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttcctt 92  Q
    ||||||||| |||||||||| || ||| | |||||| |||||||||||||||| ||||||||| |||||||||  ||||||||||    
T  47191044 tgagatgaacttatcaaaatatctctaatacatggg-tgtacaatgaggtgtaggaataaagggtgttcatgtaacattttcctt 47191127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 91
Target Start/End: Complemental strand, 25996350 - 25996267
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttcct 91  Q
    ||||||||||||| |||||||||| || |  |||||||||||||| || ||||||| |||||| |||||||||  |||||||||    
T  25996350 tgagatgaatttaccaaaatgtccttaatatatggggtgtacaataagatgtatgattaaagggtgttcatgtaacattttcct 25996267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 8 - 90
Target Start/End: Complemental strand, 34791911 - 34791829
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttcc 90  Q
    ||||||||| |||| |||||||||||| |||||| ||| ||||||  ||||||||| |||||| |||||||||  ||||||||    
T  34791911 tgagatgaaattattaaaatgtccctaatgcatgaggtttacaatatggtgtatgattaaagggtgttcatgtaacattttcc 34791829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 8 - 90
Target Start/End: Original strand, 45126946 - 45127028
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttcc 90  Q
    ||||||||| ||| |||||| |||||| | |||||||||||||||| | |||||||||||||| |||| ||||  ||||||||    
T  45126946 tgagatgaacttaccaaaatatccctaatacatggggtgtacaatgggatgtatgaataaagggtgtttatgtaacattttcc 45127028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 8 - 92
Target Start/End: Original strand, 10457910 - 10457994
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttcctt 92  Q
    |||||| |||||| |||||| ||| || |||||||||||||||||  ||||||||| |||| | |||||||||  ||||||||||    
T  10457910 tgagataaatttaccaaaatatccttaatgcatggggtgtacaatagggtgtatgattaaaaggtgttcatgtaacattttcctt 10457994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 8 - 92
Target Start/End: Complemental strand, 40808947 - 40808863
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttcctt 92  Q
    ||||||||| ||| |||||| |||||| | |||||||||||||||| |||||| ||||||| | |||| ||||  ||||||||||    
T  40808947 tgagatgaacttaccaaaatatccctaatacatggggtgtacaatggggtgtaggaataaatggtgttgatgtaacattttcctt 40808863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 8 - 92
Target Start/End: Original strand, 53273702 - 53273786
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttcctt 92  Q
    ||||||||| ||| |||||| |||||| | |||||| ||||||||||||| || ||||||| ||||||||| |  ||||||||||    
T  53273702 tgagatgaacttaccaaaatatccctaatacatgggatgtacaatgaggtataggaataaatgatgttcatataacattttcctt 53273786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 24688420 - 24688506
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttccttta 94  Q
    ||||||||| ||| |||||| |||||| | ||| ||||||||||||  |||||  |||||||| |||||||||  ||||||||||||    
T  24688420 tgagatgaacttaccaaaatatccctaatacatagggtgtacaatggagtgtagaaataaagggtgttcatgtaacattttccttta 24688506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 93
Target Start/End: Original strand, 4190283 - 4190368
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttccttt 93  Q
    ||||||||||||| |||||| || ||| | |||  ||||||||||  ||||||||| |||||| |||||||||  |||||||||||    
T  4190283 tgagatgaatttaccaaaatatctctaatacataaggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttccttt 4190368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 54237178 - 54237097
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttc 89  Q
    ||||||||| ||| |||||| |||||| | ||| |||||||||||| | |||| ||||||||| |||||||||  |||||||    
T  54237178 tgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttc 54237097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 93
Target Start/End: Original strand, 54246166 - 54246251
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttccttt 93  Q
    ||||||||| |||  ||||| || ||| | ||| |||||||||||| |||||| ||||||||| |||||||||  |||||||||||    
T  54246166 tgagatgaacttacaaaaatatctctaatacatagggtgtacaatggggtgtaggaataaagggtgttcatgtaacattttccttt 54246251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 80
Target Start/End: Complemental strand, 27748645 - 27748573
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgt 80  Q
    ||||||||| ||| |||||| |||||| | |||  |||||| ||||||||||||||||||| | |||||||||    
T  27748645 tgagatgaacttaccaaaatatccctaatacataaggtgtataatgaggtgtatgaataaaaggtgttcatgt 27748573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 345
Target Start/End: Original strand, 45199285 - 45199364
Alignment:
Q  265 attcctagcttctgcggtagagaaaacgcaagtacaacctttaatttctcaagtggcaggtactttacctaattacccata 345  Q
    ||||||||||||||||||||||||||||   ||     ||||||||||||||||||||||| ||||||| || ||||||||    
T  45199285 attcctagcttctgcggtagagaaaacgtg-gttttggctttaatttctcaagtggcaggtgctttaccaaaatacccata 45199364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 80
Target Start/End: Original strand, 53581876 - 53581948
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgt 80  Q
    ||||||||| |||||||||| |||||| | ||| || |||||||||  ||||||||||||||  |||||||||    
T  53581876 tgagatgaacttatcaaaatatccctaatacataggatgtacaatggagtgtatgaataaagagtgttcatgt 53581948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 91
Target Start/End: Complemental strand, 25413763 - 25413680
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttcct 91  Q
    ||||||||| |||  ||||| |||||| | |||  ||||||||||| |||||| ||||||||| |||||||||  |||||||||    
T  25413763 tgagatgaacttacaaaaatatccctaatacataaggtgtacaatggggtgtaggaataaagggtgttcatgtaacattttcct 25413680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 78
Target Start/End: Original strand, 29558252 - 29558322
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcat 78  Q
    ||||||||||||| ||| || | |||| |  || |||||||||||||| |||||||||||||| |||||||    
T  29558252 tgagatgaatttaccaatatattcctaatatatagggtgtacaatgagatgtatgaataaagggtgttcat 29558322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 90
Target Start/End: Complemental strand, 36150212 - 36150130
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttcc 90  Q
    ||||||||| ||| |||||| |||||  | ||| ||||||| |||| |||||||||||||||| | |||||||  ||||||||    
T  36150212 tgagatgaacttaccaaaatatccctgatacatagggtgtataatggggtgtatgaataaagggtattcatgtaacattttcc 36150130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 40480831 - 40480750
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttc 89  Q
    ||||||||| ||| |||||| |||||| | ||| || ||||||||| ||  |||||||||||| |||||||||  |||||||    
T  40480831 tgagatgaacttaccaaaatatccctaatacataggatgtacaatggggcatatgaataaagggtgttcatgtaacattttc 40480750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 42394437 - 42394518
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttc 89  Q
    ||||||||| ||| |||||| |||||| | ||| ||||||||||||   |||| ||||||||| |||||||||  |||||||    
T  42394437 tgagatgaacttaccaaaatatccctaatacatagggtgtacaatggaatgtaggaataaagggtgttcatgtaacattttc 42394518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 92
Target Start/End: Original strand, 52627995 - 52628079
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttcctt 92  Q
    ||||||||||||| |||||| | | || |||||| ||||||||||  | ||||||| |||||| |||||| ||  ||||||||||    
T  52627995 tgagatgaatttaccaaaatatacttaatgcatgaggtgtacaataggatgtatgattaaagggtgttcacgtaacattttcctt 52628079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 344
Target Start/End: Original strand, 53074190 - 53074230
Alignment:
Q  304 tttaatttctcaagtggcaggtactttacctaattacccat 344  Q
    ||||||||||||||||| |||||||||||| || |||||||    
T  53074190 tttaatttctcaagtggaaggtactttaccaaaatacccat 53074230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 198 - 362
Target Start/End: Original strand, 29022515 - 29022679
Alignment:
Q  198 ggtgaatgaaaagcactttcaaaaaact-cagttttgaaacaaaaacgccggtacagttaaagcaggaattcctagcttctgcggtagagaaaacgcaag 296  Q
    ||||||||||| || ||||||||||| | ||||||||| || ||||||| | ||||| ||||||||||||| |||||||||  | ||||||||||||| |    
T  29022515 ggtgaatgaaatgcgctttcaaaaaaattcagttttgagaccaaaacgcag-tacagctaaagcaggaatttctagcttctatgttagagaaaacgcacg 29022613  T
Q  297 tacaacctttaatttctcaagtggcaggtactttacctaattacccataaattcaagtctccaatt 362  Q
    |||||||| |||||| |||||||||||||||||| || |||||||||||||||||||||| |||||    
T  29022614 tacaacctctaatttatcaagtggcaggtacttttccaaattacccataaattcaagtcttcaatt 29022679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 92
Target Start/End: Complemental strand, 34304870 - 34304786
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttcctt 92  Q
    ||||||||| ||| ||||||||||||| |||||||||||||||||  ||||||||| ||||||||||||||||  ||||||||||    
T  34304870 tgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaaggatgttcatgtaacattttcctt 34304786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 35181598 - 35181512
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttccttta 94  Q
    ||||||||| ||| ||||||||||||| |||||||||||||||||  ||||||||| |||||| |||||||||  ||||||||||||    
T  35181598 tgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttccttta 35181512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 90
Target Start/End: Complemental strand, 29705444 - 29705362
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttcc 90  Q
    ||||||||| |||||||||| |||||| | |||||||||||||||| ||||||  |||||||| |||||||||  ||||||||    
T  29705444 tgagatgaacttatcaaaatatccctaatacatggggtgtacaatggggtgtagaaataaagggtgttcatgtaacattttcc 29705362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 8 - 93
Target Start/End: Original strand, 33630011 - 33630096
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttccttt 93  Q
    ||||||||| |||  |||||||||||| ||||| |||||||||||||||||||||| |||||| ||||| |||  |||||| ||||    
T  33630011 tgagatgaaattactaaaatgtccctaatgcatagggtgtacaatgaggtgtatgattaaagggtgttcgtgtaacatttttcttt 33630096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 42295277 - 42295192
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttccttt 93  Q
    ||||||||| ||| |||||| |||||| | ||||| ||||||||||||||||| ||||||||| |||||||||  |||||| ||||    
T  42295277 tgagatgaacttaccaaaatatccctaatacatggagtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttttcttt 42295192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 96
Target Start/End: Original strand, 16603644 - 16603732
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttcctttaaa 96  Q
    ||||||||||||| |||||||||  || ||||||||||||| ||| |||||||||| |||||| ||| |||||  ||||||||| ||||    
T  16603644 tgagatgaatttaccaaaatgtctttaatgcatggggtgtataataaggtgtatgattaaagggtgtgcatgtaacattttcctataaa 16603732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 93
Target Start/End: Original strand, 36743501 - 36743586
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttccttt 93  Q
    ||||||||| ||| |||||| |||||| | ||| |||||||||||| | |||| ||||||||| |||||||||  |||||||||||    
T  36743501 tgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttccttt 36743586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 184 - 280
Target Start/End: Original strand, 36646807 - 36646903
Alignment:
Q  184 tttcagtttgtttgggtgaatgaaaagcactttcaaaaaactcagttttgaaacaaaaacgccggtacagttaaagcaggaattcctagcttctgcg 280  Q
    |||||| ||||||||||||||||||||| | | || ||||||||||||||| || |||||||  ||   ||| |||| || ||||||||||||||||    
T  36646807 tttcaggttgtttgggtgaatgaaaagcgcgtccagaaaactcagttttgagaccaaaacgctagttgtgttgaagctggtattcctagcttctgcg 36646903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 90
Target Start/End: Complemental strand, 11582848 - 11582766
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttcc 90  Q
    ||||||||| ||| |||||| |||||| | ||| |||||||||||| | |||| ||||||||| |||||||||  ||||||||    
T  11582848 tgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttcc 11582766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 80
Target Start/End: Original strand, 40528652 - 40528725
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaat-aaaggatgttcatgt 80  Q
    |||||| |||||||||||||||||||| |  ||||||||||||||| ||| | ||||| ||||| |||||||||    
T  40528652 tgagataaatttatcaaaatgtccctaatatatggggtgtacaatggggtttgtgaataaaagggtgttcatgt 40528725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 80
Target Start/End: Complemental strand, 1375624 - 1375552
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgt 80  Q
    |||||| |||||| |||||| |||||| |  ||||||||||||||  |||||||||||||| | |||||||||    
T  1375624 tgagataaatttaccaaaatatccctaatatatggggtgtacaattgggtgtatgaataaaaggtgttcatgt 1375552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 96
Target Start/End: Complemental strand, 5754985 - 5754897
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttcctttaaa 96  Q
    ||||||||| ||| |||||| |||||| |  ||||| ||||||||| | |||| ||||||| | |||||||||  ||||||||||||||    
T  5754985 tgagatgaacttaccaaaatatccctaatatatgggatgtacaatgggatgtaggaataaaaggtgttcatgtaacattttcctttaaa 5754897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 29800968 - 29801028
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaa 68  Q
    ||||||||| ||| |||||| |||||| | |||||||||||||||| | ||||||||||||    
T  29800968 tgagatgaacttaccaaaatatccctaatacatggggtgtacaatgggatgtatgaataaa 29801028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 362
Target Start/End: Complemental strand, 36114703 - 36114644
Alignment:
Q  302 cctttaatttctcaagtggcaggtactttacctaattacccataaattcaagtctccaatt 362  Q
    |||||||||| |||||||||||| |||| |||||||||||| |||||||||| || |||||    
T  36114703 cctttaatttttcaagtggcaggcactt-acctaattacccttaaattcaagccttcaatt 36114644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 93
Target Start/End: Original strand, 30660762 - 30660845
Alignment:
Q  10 agatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttccttt 93  Q
    ||||||| ||| |||||| |||||| | ||| |||||||||||| | ||||  |||||||| |||||||||  |||||||||||    
T  30660762 agatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtagaaataaagggtgttcatgtaacattttccttt 30660845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 16358851 - 16358913
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaagg 70  Q
    |||||||||||||||||||| | | || |||||||| ||||||||  ||||||||| ||||||    
T  16358851 tgagatgaatttatcaaaatattcttaatgcatgggatgtacaatagggtgtatgattaaagg 16358913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 80
Target Start/End: Complemental strand, 20148842 - 20148770
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgt 80  Q
    ||||||||| ||| |||||| |||||| |  ||| ||||||||||| | |||||||||||||| |||| ||||    
T  20148842 tgagatgaacttaccaaaatatccctaatatatgaggtgtacaatgggatgtatgaataaagggtgtttatgt 20148770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 343
Target Start/End: Complemental strand, 22937602 - 22937562
Alignment:
Q  303 ctttaatttctcaagtggcaggtactttacctaattaccca 343  Q
    ||||||||||||||||||||||| ||||||| || ||||||    
T  22937602 ctttaatttctcaagtggcaggtgctttaccaaaataccca 22937562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 80
Target Start/End: Complemental strand, 26125717 - 26125645
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgt 80  Q
    ||||||||| ||| |||||| |||||| | ||| ||||||||||||   |||||||||||||| |||| ||||    
T  26125717 tgagatgaacttaccaaaatatccctaatacatagggtgtacaatggaatgtatgaataaagggtgtttatgt 26125645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 6e-19; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 8 - 96
Target Start/End: Complemental strand, 7367631 - 7367543
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttcctttaaa 96  Q
    ||||||||| ||| |||||| |||||| | |||||| |||||||||||||||||||||||| ||||||||| |  ||||||||||||||    
T  7367631 tgagatgaacttaccaaaatatccctaatacatgggatgtacaatgaggtgtatgaataaatgatgttcatataacattttcctttaaa 7367543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 96
Target Start/End: Original strand, 31109245 - 31109328
Alignment:
Q  13 tgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttcctttaaa 96  Q
    ||||||||||||||| |||||||||||||||||||| |||| | ||||||| |||||| |||||||||  ||||||||| ||||    
T  31109245 tgaatttatcaaaatatccctagtgcatggggtgtataatgggatgtatgattaaagggtgttcatgtaacattttcctataaa 31109328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 12 - 101
Target Start/End: Complemental strand, 3213478 - 3213389
Alignment:
Q  12 atgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttcctttaaagaaag 101  Q
    ||||||||| |||||| ||| || | |||||||||||||||||| |||||||||||||| |||| ||||  |||||||||||||| ||||    
T  3213478 atgaatttaccaaaatatccttaatacatggggtgtacaatgagatgtatgaataaagggtgtttatgtaacattttcctttaaataaag 3213389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 8 - 93
Target Start/End: Original strand, 26670027 - 26670112
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttccttt 93  Q
    ||||||||| ||| |||||| |||||| | |||| |||||||||||||||||| ||||||||| |||||||||  |||||||||||    
T  26670027 tgagatgaacttaccaaaatatccctaatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacattttccttt 26670112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 8 - 92
Target Start/End: Complemental strand, 33242485 - 33242401
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttcctt 92  Q
    ||||||||||||| |||||||||| || | ||||||||||||||| |||||||||| |||| | |||||||||  ||||||||||    
T  33242485 tgagatgaatttaccaaaatgtccttaatacatggggtgtacaataaggtgtatgattaaatggtgttcatgtaacattttcctt 33242401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 7273353 - 7273439
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttccttta 94  Q
    ||||||||| ||| |||||| || ||| | ||||||||||||||| ||||||| ||||||||| |||||||||  ||||||||||||    
T  7273353 tgagatgaacttaccaaaatatctctaatacatggggtgtacaataaggtgtaggaataaagggtgttcatgtaacattttccttta 7273439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 8 - 90
Target Start/End: Complemental strand, 33253995 - 33253913
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttcc 90  Q
    ||||||||||||| ||| ||||||||| |||||||||||||||||  ||||| ||| |||| | |||||||||  ||||||||    
T  33253995 tgagatgaatttaccaatatgtccctaatgcatggggtgtacaatagggtgtgtgattaaatggtgttcatgtaacattttcc 33253913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 7292829 - 7292744
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttccttt 93  Q
    ||||||||| ||| |||||| |||||| | ||| ||||||| ||||||||||||||||||| | ||||| |||  |||||||||||    
T  7292829 tgagatgaacttaccaaaatatccctaatacatagggtgtataatgaggtgtatgaataaatggtgttcttgtaacattttccttt 7292744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 91
Target Start/End: Original strand, 9698351 - 9698434
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttcct 91  Q
    ||||||||| ||| |||||| |||||| | ||| |||||||||||| | |||| ||||||||| |||||||||  |||||||||    
T  9698351 tgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttcct 9698434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 90
Target Start/End: Original strand, 13743239 - 13743321
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttcc 90  Q
    ||||||||| ||| |||||| |||||| | |||||||||||||||  | |||||||||||| | |||||||||  ||||||||    
T  13743239 tgagatgaacttaccaaaatatccctaatacatggggtgtacaattggatgtatgaataaaaggtgttcatgtaacattttcc 13743321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 90
Target Start/End: Original strand, 13748739 - 13748821
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttcc 90  Q
    ||||||||| ||| |||||| |||||| | |||||||||||||||  | |||||||||||| | |||||||||  ||||||||    
T  13748739 tgagatgaacttaccaaaatatccctaatacatggggtgtacaattggatgtatgaataaaaggtgttcatgtaacattttcc 13748821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 26466881 - 26466796
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttccttt 93  Q
    ||||||||| ||| ||||||  ||||| | ||||| |||||||||| |||||| ||||||||| |||| ||||  |||||||||||    
T  26466881 tgagatgaacttaccaaaataaccctaatacatggagtgtacaatggggtgtaggaataaagggtgtttatgtaacattttccttt 26466796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 362
Target Start/End: Original strand, 16543553 - 16543615
Alignment:
Q  299 caacctttaatttctcaagtggcaggtactttacctaattacccataaattcaagtctccaatt 362  Q
    ||||||||||||||||||| | || |||||| |||||||||||| |||||||||| || |||||    
T  16543553 caacctttaatttctcaagggacatgtactt-acctaattacccctaaattcaagccttcaatt 16543615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 362
Target Start/End: Complemental strand, 17834583 - 17834521
Alignment:
Q  299 caacctttaatttctcaagtggcaggtactttacctaattacccataaattcaagtctccaatt 362  Q
    ||||||||||||||||||| | || |||||| |||||||||||| |||||||||| || |||||    
T  17834583 caacctttaatttctcaagggacaagtactt-acctaattacccctaaattcaagccttcaatt 17834521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 12 - 91
Target Start/End: Original strand, 21293699 - 21293778
Alignment:
Q  12 atgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttcct 91  Q
    ||||||||| |||||| ||| || | ||||||||||||| |||  |||||||||||||| |||| ||||  |||||||||    
T  21293699 atgaatttaccaaaatatccttaatacatggggtgtacagtgaaatgtatgaataaagggtgtttatgtaacattttcct 21293778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 80
Target Start/End: Complemental strand, 27441624 - 27441552
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgt 80  Q
    ||||||||||||| |||||| ||| || | ||| || ||||||||  ||||||||| |||||| |||||||||    
T  27441624 tgagatgaatttaccaaaatatccttaatacataggatgtacaatagggtgtatgattaaagggtgttcatgt 27441552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 91
Target Start/End: Complemental strand, 43317525 - 43317442
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttcct 91  Q
    |||||||||||||||||||| ||||||  |||| || |||||||||||||||||||||||| | |||||||||  |||||||||    
T  43317525 tgagatgaatttatcaaaatatccctaaagcataggatgtacaatgaggtgtatgaataaatggtgttcatgtaacattttcct 43317442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 40237001 - 40236915
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttccttta 94  Q
    ||||||||| ||| ||||||||||||| |||||||||||||||||  | ||||||| |||||| |||||||||  ||||||||||||    
T  40237001 tgagatgaaattaccaaaatgtccctaatgcatggggtgtacaataggatgtatgattaaagggtgttcatgtaacattttccttta 40236915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 8 - 91
Target Start/End: Original strand, 5194249 - 5194332
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttcct 91  Q
    |||||||||||||||||||| ||| ||   ||| ||||||||||||||||||||||||||| | |||||||||  |||||||||    
T  5194249 tgagatgaatttatcaaaatatccttaaaacatagggtgtacaatgaggtgtatgaataaatggtgttcatgtaacattttcct 5194332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 33384953 - 33384867
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaat-gaggtgtatgaataaaggatgttcatgttgcattttccttt 93  Q
    ||||||||||||| ||||||||||||| ||||||| || |||||| | ||||||||| |||| |||||||||||  |||||||||||    
T  33384953 tgagatgaatttaccaaaatgtccctaatgcatggagtatacaataggggtgtatgattaaatgatgttcatgtaacattttccttt 33384867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 302 - 362
Target Start/End: Original strand, 19095462 - 19095521
Alignment:
Q  302 cctttaatttctcaagtggcaggtactttacctaattacccataaattcaagtctccaatt 362  Q
    |||||||||||||||||||||||||| |||||||||||||| |||||||||| || |||||    
T  19095462 cctttaatttctcaagtggcaggtac-ttacctaattacccttaaattcaagccttcaatt 19095521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 91
Target Start/End: Complemental strand, 35069803 - 35069720
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttcct 91  Q
    ||||||||| ||| |||||| |||||| | |||| |||||||||||||||||| ||||||||  |||||||||  |||||||||    
T  35069803 tgagatgaacttaccaaaatatccctaatacatgaggtgtacaatgaggtgtaggaataaagagtgttcatgtaacattttcct 35069720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 299 - 362
Target Start/End: Original strand, 3750122 - 3750186
Alignment:
Q  299 caacctttaatttctcaa-gtggcaggtactttacctaattacccataaattcaagtctccaatt 362  Q
    |||||||||||||||||| |||| |||||||||||||||||||| ||||||| ||| || |||||    
T  3750122 caacctttaatttctcaaagtggtaggtactttacctaattacctataaatttaagccttcaatt 3750186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 8 - 96
Target Start/End: Original strand, 24280614 - 24280702
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttcctttaaa 96  Q
    ||||||||||||| |||||| |  |||||||||||| |||| |||  |||||||||||||||| |||||| ||  ||||||||| ||||    
T  24280614 tgagatgaatttaccaaaatatttctagtgcatgggatgtagaatagggtgtatgaataaagggtgttcacgtaacattttcctataaa 24280702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 8 - 80
Target Start/End: Original strand, 43343642 - 43343714
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgt 80  Q
    ||||||||| |||||||||| |||||| | |||||||||||||||  ||||||  |||||| |||||||||||    
T  43343642 tgagatgaacttatcaaaatatccctaatacatggggtgtacaatagggtgtagaaataaatgatgttcatgt 43343714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 8 - 80
Target Start/End: Original strand, 44416952 - 44417024
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgt 80  Q
    ||||||||| |||||||||| |||||| | |||||||||||||||  ||||||  |||||| |||||||||||    
T  44416952 tgagatgaacttatcaaaatatccctaatacatggggtgtacaatagggtgtagaaataaatgatgttcatgt 44417024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 90
Target Start/End: Original strand, 5810942 - 5811024
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttcc 90  Q
    ||||||||| |||||||||| |||||| |  || |||||||||||| |||||| ||||||||| || ||||||  ||||||||    
T  5810942 tgagatgaacttatcaaaatatccctaatatatagggtgtacaatggggtgtaggaataaagggtggtcatgtaacattttcc 5811024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 90
Target Start/End: Original strand, 24001030 - 24001112
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttcc 90  Q
    ||||||||| ||| |||||| |||||| | ||| |||||||||||| | |||| ||||||||| |||||||||  ||||||||    
T  24001030 tgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttcc 24001112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 90
Target Start/End: Complemental strand, 31513369 - 31513287
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttcc 90  Q
    ||||||||||||| |||||| ||| || |||||||||| ||||||  ||||||||| |||||  |||||||||  ||||||||    
T  31513369 tgagatgaatttaccaaaatatccttaatgcatggggtatacaatagggtgtatgattaaagagtgttcatgtaacattttcc 31513287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 68
Target Start/End: Original strand, 32029837 - 32029895
Alignment:
Q  10 agatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaa 68  Q
    ||||||||||| |||||| |||||| | |||||||||||||||| |||||| |||||||    
T  32029837 agatgaatttaccaaaatatccctaatacatggggtgtacaatggggtgtaggaataaa 32029895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 90
Target Start/End: Original strand, 42538449 - 42538531
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttcc 90  Q
    ||||||||| ||| |||||| |||||| | ||| |||||||||||| | |||| ||||||||| |||||||||  ||||||||    
T  42538449 tgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttcc 42538531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 90
Target Start/End: Complemental strand, 42972934 - 42972852
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttcc 90  Q
    ||||||||| ||| |||||| |||||| | |||| |||||||||||  ||||| |||||||||||||||| ||  ||||||||    
T  42972934 tgagatgaacttaccaaaatatccctaatacatgaggtgtacaatggagtgtaggaataaaggatgttcaggtaacattttcc 42972852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 80
Target Start/End: Complemental strand, 10573831 - 10573759
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgt 80  Q
    ||||||||||||| |||||| | |||| | |||||||||||||||  | |||||||||||||| |||| ||||    
T  10573831 tgagatgaatttaccaaaatattcctaatacatggggtgtacaataggatgtatgaataaagggtgtttatgt 10573759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 5015477 - 5015392
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttccttt 93  Q
    ||||||||| ||| |||||| |||||| | |||| |||||||||||  |||||  |||||||  |||||||||  |||||||||||    
T  5015477 tgagatgaacttaccaaaatatccctaatacatgaggtgtacaatggagtgtagaaataaagagtgttcatgtaacattttccttt 5015392  T

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Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 80
Target Start/End: Complemental strand, 44326260 - 44326188
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgt 80  Q
    ||||||||| ||| |||||| |||||| |  ||| ||||||||||| | |||||||||||||| |||| ||||    
T  44326260 tgagatgaacttaccaaaatatccctaatatatgaggtgtacaatgggatgtatgaataaagggtgtttatgt 44326188  T

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Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 45326102 - 45326042
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaa 68  Q
    ||||||||| ||| |||||| |||||| |  ||||||||||||||| | ||||||||||||    
T  45326102 tgagatgaacttaccaaaatatccctaatatatggggtgtacaatgtgatgtatgaataaa 45326042  T

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Target: scaffold0119 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 767 - 682
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttccttt 93  Q
    ||||||||| ||| |||||| |||||| | |||| |||||||||||||||||| ||||||||| |||||||||  |||||||||||    
T  767 tgagatgaacttaccaaaatatccctaatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacattttccttt 682  T

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Target: scaffold0385 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 92
Target Start/End: Complemental strand, 11333 - 11249
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttcctt 92  Q
    ||||||||| ||| |||||| |||||| |  ||||||||||||||| |||||||||||||||  |||||||||  ||||||||||    
T  11333 tgagatgaacttaccaaaatatccctaatatatggggtgtacaatggggtgtatgaataaagtgtgttcatgtgacattttcctt 11249  T

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Target: scaffold0100 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 8 - 90
Target Start/End: Original strand, 35474 - 35556
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttcc 90  Q
    ||||||||||||| ||| ||||||||| |||||||||||||||||  ||||||||| |||| | |||| ||||  ||||||||    
T  35474 tgagatgaatttaccaatatgtccctaatgcatggggtgtacaatatggtgtatgattaaatggtgtttatgtaacattttcc 35556  T

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Target: scaffold0961 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0961
Description:

Target: scaffold0961; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 299 - 362
Target Start/End: Complemental strand, 851 - 789
Alignment:
Q  299 caacctttaatttctcaagtggcaggtactttacctaattacccataaattcaagtctccaatt 362  Q
    ||||||||||||||||||| | ||||||| |||||||||||||| |||||||||| || |||||    
T  851 caacctttaatttctcaagggacaggtac-ttacctaattacccctaaattcaagccttcaatt 789  T

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Target: scaffold0038 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 112737 - 112656
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgttgcattttc 89  Q
    ||||||||| ||| |||||| |||||| | ||| ||||||||||||   |||| ||||||||| |||||||||  |||||||    
T  112737 tgagatgaacttaccaaaatatccctaatacatagggtgtacaatggaatgtaggaataaagggtgttcatgtaacattttc 112656  T

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Target: scaffold0003 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 80
Target Start/End: Original strand, 45737 - 45809
Alignment:
Q  8 tgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaaggatgttcatgt 80  Q
    ||||||||||||| |||||| ||| || | ||| || ||||||||  ||||||||| |||||| |||||||||    
T  45737 tgagatgaatttaccaaaatatccttaatacataggatgtacaatagggtgtatgattaaagggtgttcatgt 45809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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