View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11280A_low_45 (Length: 367)
Name: NF11280A_low_45
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_45 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 4 - 367
Target Start/End: Original strand, 17584596 - 17584961
Alignment:
| Q |
4 |
aatatcataaaaaagcagtatatgcacagctcatcaggaggagccgtcgcattagtgcatttaaaggaatctatggaaaggctaaaattagctagccgat |
103 |
Q |
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| T |
17584596 |
aatatcataaaaaagtagtatatgcacagctcatcaggaggagccgtcacattagtgcatttaaaggaatctatggaaaggctaaaattagctagccgat |
17584695 |
T |
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| Q |
104 |
tagcacaatggttttcttccttcaagtatgacagaactgaacatgccaatataaagccaaaagacgttgaatgtgccgcattgaagtaggaaccaccacc |
203 |
Q |
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| T |
17584696 |
tagcacaacggttttcttccttcaagtatgacagaactgaacatgccaatataaagccaaaagatgttgaatgtgccgcattgaagtaggaaccaccacc |
17584795 |
T |
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| Q |
204 |
ctaaattttcaattatctgtaaccatgtctaaaagaattttagagtacttgggttggatattacggtgaagcgattgagtagagcaactattgattactt |
303 |
Q |
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| T |
17584796 |
ctaaattttcaattatctgtaaccatgtctaaaagaattttagagtccttgggttggatattacggtgaagcaattgagtagagcaactattgattactt |
17584895 |
T |
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| Q |
304 |
ttgagaaattctggattgtccaaacatgtacaac--atattctagaaatccatatttgtgctttgt |
367 |
Q |
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| T |
17584896 |
ttgagaaattctggattgtcaaaacatgtacaacatatattctagaaatccatatttttgctttgt |
17584961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 4 - 228
Target Start/End: Complemental strand, 14742482 - 14742262
Alignment:
| Q |
4 |
aatatcataaaaaagcagtatatgcacagctcatcaggaggagccgtcgcattagtgcatttaaaggaatctatggaaaggctaaaattagctagccgat |
103 |
Q |
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| T |
14742482 |
aatatcataaaaaagtagtatatgcacagctcatcaggaggagccgtcgcattagtgcatttaaaggaatctatggaaaggctaaaatttgctagccgat |
14742383 |
T |
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| Q |
104 |
tagcacaatggttttcttccttcaagtatgacagaactgaacatgccaatataaagccaaaagacgttgaatgtgccgcattgaagtaggaaccaccacc |
203 |
Q |
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| T |
14742382 |
tagcacaacggttttcgtccttcaa----gacagaactgaacatgccaatataaagccaaaagacattgaatgtgccgcattgaagtaggaaccaccacc |
14742287 |
T |
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| Q |
204 |
ctaaattttcaattatctgtaacca |
228 |
Q |
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| T |
14742286 |
ctaaattttcaattatctgtaacca |
14742262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 219 - 367
Target Start/End: Complemental strand, 14741386 - 14741235
Alignment:
| Q |
219 |
tctgtaaccatgtctaaaagaattttagagtacttgggttggatattacggtgaagcgattgagtagagcaactattgattacttttgagaaattctgga |
318 |
Q |
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||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14741386 |
tctgtaaccatgtctaaaagaattttagagtccttgagttggatattacggtgaagcgattgagtagagcaactattgattacttttgagaaattctgga |
14741287 |
T |
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| Q |
319 |
ttgtccaaacatgt-acaac--atattctagaaatccatatttgtgctttgt |
367 |
Q |
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| T |
14741286 |
ttgtcaaaacatgtaacaacatatattctagaaatccatatttttgctttgt |
14741235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 161
Target Start/End: Original strand, 38929841 - 38929922
Alignment:
| Q |
81 |
aaggctaaaattagctagccgattagcacaatggttt-tcttccttcaagtatgacagaactgaacatgccaatataaagcc |
161 |
Q |
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| T |
38929841 |
aaggctaaaattagttagccaatcagcacaacagtttcttttcctccaagtatgacgaaactgaacatgtcaatctaaagcc |
38929922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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