View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11280A_low_47 (Length: 365)

Name: NF11280A_low_47
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11280A_low_47
NF11280A_low_47
[»] chr3 (1 HSPs)
chr3 (5-360)||(31784446-31784801)
[»] chr7 (2 HSPs)
chr7 (41-314)||(19631618-19631893)
chr7 (5-45)||(19633725-19633765)


Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 5 - 360
Target Start/End: Original strand, 31784446 - 31784801
Alignment:
Q  5 tgtctcaagccatcaagacaggaaaaatcacagactcgcatggacgagaagttagtgtaaacaatgcaatatttgttttttctttctcaggttgccaaaa 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  31784446 tgtctcaagccatcaagacaggaaaaatcacagactcgcatggacgagaagttagtgcaaacaatgcaatatttgttttttctttctcaggttaccaaaa 31784545  T
Q  105 tagtttgatgcaaacaagggaaccttccaactattatgaggaaagaataatgagtgtaaggggcggaggtatcaagataaaagttgaacatatggttaga 204  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||  |||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  31784546 tagtttgatgcaaacaagggaaccttccaactattctgaggaaagaatgctgagtgtacggggcggaggtatcaagatcaaagttgaacatatggttaga 31784645  T
Q  205 gacatcagaaacaaaagcactggtgtagctaacaattcaataaatgtcattcctaatctaaatttcataaacaaacgaaaattgattggtgacaatgaac 304  Q
    |||||||||||| ||||||  |||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31784646 gacatcagaaaccaaagcatcggtgtacctaacaattcaataaacatcattcctaatctaaatttcataaacaaacgaaaattgattggtgacaatgaac 31784745  T
Q  305 ttcatgatccctatttacttgcagatacggctaaaaaggcgcatacaacaccaaac 360  Q
    |||| |||||| ||||||| |||||| ||||||||| ||| ||||||||| |||||    
T  31784746 ttcacgatccccatttactcgcagatgcggctaaaagggcacatacaacatcaaac 31784801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 41 - 314
Target Start/End: Complemental strand, 19631893 - 19631618
Alignment:
Q  41 cgcatggacgagaagttagtgtaaacaatgcaatatttgttttttctttctcaggttgccaaaatagtttgatgcaaacaagggaaccttccaactatta 140  Q
    |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19631893 cgcatggacgagaagttagtgtaaacaatgtactatttgttttttctttctcaggttgccaaaatagtttgatgcaaacaagggaaccttccaactatta 19631794  T
Q  141 tgaggaaa--gaataatgagtgtaaggggcggaggtatcaagataaaagttgaacatatggttagagacatcagaaacaaaagcactggtgtagctaaca 238  Q
    ||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||||||    
T  19631793 tgaggaaaaagaataataagtgtaaggggcggaggtatcaagataaaagttgaacatatggttagagacatcagaaaccaaagcatcggtgtagctaaca 19631694  T
Q  239 attcaataaatgtcattcctaatctaaatttcataaacaaacgaaaattgattggtgacaatgaacttcatgatcc 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  19631693 attcaataaatgtcattcctaatctaaatttcataaacaaacgaaaattgattggtgacaatgaacttcacgatcc 19631618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 19633765 - 19633725
Alignment:
Q  5 tgtctcaagccatcaagacaggaaaaatcacagactcgcat 45  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  19633765 tgtctcaagccatcaagacaggaaaaatcacagactcgcat 19633725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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