View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11280A_low_5 (Length: 561)
Name: NF11280A_low_5
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 119; Significance: 2e-60; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 14214524 - 14214662
Alignment:
| Q |
1 |
ttgttgaatatgaaaagaaaaacataaataaaggttcattggttgatgattccttaacttccaaatgattctggccgctcctaatatgcccgaagatggg |
100 |
Q |
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| T |
14214524 |
ttgttgaatatgaaaagaaacacataaataaaggttcatcggttgatgattcattgacttccgaatgattctggccgctcctaatatgcccgaagatggg |
14214623 |
T |
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| Q |
101 |
ttaagctattgtctccactccttgccccattttctcacc |
139 |
Q |
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| T |
14214624 |
ttaagctattgtctccactccttgccccattttctcacc |
14214662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 218 - 334
Target Start/End: Original strand, 14214752 - 14214865
Alignment:
| Q |
218 |
caaaactcaactaaatacaataccaaacttgctactttaagtctaaaatgactacataaaggagccaaaaccctgtatgtatgattttctgtcatcaata |
317 |
Q |
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| T |
14214752 |
caaaactcaactaaatacaataccaaacttgctactttaagtctaaaatgactatataaaggagccaaaaacct---tgtatgattttctgtcatcaata |
14214848 |
T |
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| Q |
318 |
aaaatttatcagtttgc |
334 |
Q |
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| T |
14214849 |
aaaatttatcagtttgc |
14214865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 345 - 388
Target Start/End: Original strand, 14214926 - 14214969
Alignment:
| Q |
345 |
ctttatgtccatcgtagatgtatgtggaaaataattgtatcatt |
388 |
Q |
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| T |
14214926 |
ctttatgtccatcttagatgtatgtggaaaataattgtatcatt |
14214969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 963309 - 963353
Alignment:
| Q |
4 |
ttgaatatgaaaagaaaaacataaataaaggttcattggttgatg |
48 |
Q |
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| T |
963309 |
ttgaatatgaaaagaaaaacataagcaaaagatcattggttgatg |
963353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 30918397 - 30918446
Alignment:
| Q |
4 |
ttgaatatgaaaagaaaaacataaataaaggttcattggttgatgattcc |
53 |
Q |
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| T |
30918397 |
ttgaatatgaaaaggaaaacataaataaaagatcaccggttgatgattcc |
30918446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 7783603 - 7783651
Alignment:
| Q |
4 |
ttgaatatgaaaagaaaaacataaataaaggttcattggttgatgattc |
52 |
Q |
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|||||||||||||| |||||||||||||||| || | | |||||||||| |
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| T |
7783603 |
ttgaatatgaaaaggaaaacataaataaaggatcgtcgattgatgattc |
7783651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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