View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11280A_low_51 (Length: 364)

Name: NF11280A_low_51
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11280A_low_51
NF11280A_low_51
[»] chr3 (14 HSPs)
chr3 (44-342)||(54396788-54397086)
chr3 (31-147)||(54397466-54397582)
chr3 (184-340)||(54381906-54382059)
chr3 (35-145)||(54382029-54382139)
chr3 (43-156)||(54382156-54382269)
chr3 (44-147)||(54397121-54397224)
chr3 (105-159)||(54382429-54382483)
chr3 (108-214)||(54397537-54397643)
chr3 (35-149)||(54397806-54397920)
chr3 (44-147)||(54397190-54397293)
chr3 (44-147)||(54397328-54397431)
chr3 (112-147)||(54397052-54397087)
chr3 (44-146)||(54397740-54397842)
chr3 (105-159)||(54397934-54397988)


Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 44 - 342
Target Start/End: Complemental strand, 54397086 - 54396788
Alignment:
Q  44 caatcaggcttaccttgatggctggttaaaagatagccgggtccagaaagcaaaacccactcacaactccaatcgagtttatcttgatggatggttgaaa 143  Q
    |||||| | ||| |||||||| ||||| ||||||||||  ||  || ||| |||| |||| |  |||||||||| |||||| ||||||||||||||||||    
T  54397086 caatcaagtttatcttgatggatggttgaaagatagccaagttgagcaagtaaaatccacccctaactccaatcaagtttaccttgatggatggttgaaa 54396987  T
Q  144 gataccaaggatcaaatgaaaaaaccaattcccagcctagatcaggcttaccttgatggttggttgaaagactcgcatgcagcgaactccatgaagaaaa 243  Q
    ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54396986 gatgccaaggatcaaatgaaaaaaccaattcacagcctagatcaggcttaccttgatggttggttgaaagactcgcatgcagcgaactccatgaagaaaa 54396887  T
Q  244 ttggacaagacatggcagaatcaaaagggaaaccatcttctaaagttgaccatacagaggcattcaagttagattttttcactatggatgatctttatg 342  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  54396886 ttggacaagacatggcagaatcaaaagggaaaccatcttctaaagttgaccatacagaggcattcaagttagcttttttcactatggatgatctttatg 54396788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 31 - 147
Target Start/End: Complemental strand, 54397582 - 54397466
Alignment:
Q  31 ctatccacaacctcaatcaggcttaccttgatggctggttaaaagatagccgggtccagaaagcaaaacccactcacaactccaatcgagtttatcttga 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  54397582 ctatccacaacctcaatcaggcttaccttgatggctggttaaaagatagccgggtccagaaagcaaaacccacccacaactccaatcgagtttatcttga 54397483  T
Q  131 tggatggttgaaagata 147  Q
    |||||||||||||||||    
T  54397482 tggatggttgaaagata 54397466  T

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Target: chr3; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 184 - 340
Target Start/End: Complemental strand, 54382059 - 54381906
Alignment:
Q  184 atcaggcttaccttgatggttggttgaaagactcgcatgcagcgaactccatgaagaaaattggacaagacatggcagaatcaaaagggaaaccatcttc 283  Q
    |||| ||||| |||||||||||||||||||||||||| ||||| |||| ||   ||||||||||||||||| || |||||||| |  | |||| ||||||    
T  54382059 atcaagcttatcttgatggttggttgaaagactcgcacgcagcaaactaca---agaaaattggacaagacttgacagaatcagacagcaaactatcttc 54381963  T
Q  284 taaagttgaccatacagaggcattcaagttagattttttcactatggatgatcttta 340  Q
    |||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||    
T  54381962 taaagttgaccatacagaggcattcaagttagctttttttactctggatgatcttta 54381906  T

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Target: chr3; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 35 - 145
Target Start/End: Complemental strand, 54382139 - 54382029
Alignment:
Q  35 ccacaacctcaatcaggcttaccttgatggctggttaaaagatagccgggtccagaaagcaaaacccactcacaactccaatcgagtttatcttgatgga 134  Q
    ||||||| |||||||||| ||| |||| |||||||||||||||| || |||  ||||||||||| |||| ||||||||||||| || ||||||||||||     
T  54382139 ccacaacttcaatcaggcatactttgacggctggttaaaagatacccaggttgagaaagcaaaatccacccacaactccaatcaagcttatcttgatggt 54382040  T
Q  135 tggttgaaaga 145  Q
    |||||||||||    
T  54382039 tggttgaaaga 54382029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 43 - 156
Target Start/End: Complemental strand, 54382269 - 54382156
Alignment:
Q  43 tcaatcaggcttaccttgatggctggttaaaagatagccgggtccagaaagcaaaacccactcacaactccaatcgagtttatcttgatggatggttgaa 142  Q
    |||||||||||||||||||||||||||||||||||||||  ||  ||| |||||||||||| |  | |||||||| || |||  ||||||| ||||||||    
T  54382269 tcaatcaggcttaccttgatggctggttaaaagatagccaagttgagacagcaaaacccacccctatctccaatcaagcttactttgatggttggttgaa 54382170  T
Q  143 agataccaaggatc 156  Q
    ||| |||| |||||    
T  54382169 agaaaccagggatc 54382156  T

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Target: chr3; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 44 - 147
Target Start/End: Complemental strand, 54397224 - 54397121
Alignment:
Q  44 caatcaggcttaccttgatggctggttaaaagatagccgggtccagaaagcaaaacccactcacaactccaatcgagtttatcttgatggatggttgaaa 143  Q
    |||||| ||||| |||||||| ||||| ||||||||||  || ||| ||| |||| |||| |  |||||||||| |||||| ||||||||||||||||||    
T  54397224 caatcaagcttatcttgatggatggttgaaagatagccaagttcagcaaggaaaatccacccctaactccaatcaagtttaccttgatggatggttgaaa 54397125  T
Q  144 gata 147  Q
    ||||    
T  54397124 gata 54397121  T

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Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 105 - 159
Target Start/End: Complemental strand, 54382483 - 54382429
Alignment:
Q  105 cacaactccaatcgagtttatcttgatggatggttgaaagataccaaggatcaaa 159  Q
    ||||| ||||||| || ||| ||||||||||||||||||||||||||||||||||    
T  54382483 cacaattccaatcaagcttaccttgatggatggttgaaagataccaaggatcaaa 54382429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 108 - 214
Target Start/End: Complemental strand, 54397643 - 54397537
Alignment:
Q  108 aactccaatcgagtttatcttgatggatggttgaaagataccaaggatcaaatgaaaaaaccaattcccagcctagatcaggcttaccttgatggttggt 207  Q
    |||||||| | |||||||||||| || ||||||||||| ||||| ||||||| | ||||| | || | || |||  ||||||||||||||||||| ||||    
T  54397643 aactccaaccaagtttatcttgacgggtggttgaaagacaccaaagatcaaaaggaaaaaactatccacaacctcaatcaggcttaccttgatggctggt 54397544  T
Q  208 tgaaaga 214  Q
    | |||||    
T  54397543 taaaaga 54397537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 35 - 149
Target Start/End: Complemental strand, 54397920 - 54397806
Alignment:
Q  35 ccacaacctcaatcaggcttaccttgatggctggttaaaagatagccgggtccagaaagcaaaacccactcacaactccaatcgagtttatcttgatgga 134  Q
    |||||||  |||||| | |||||| ||||| |||||||| |||| ||  || |||||| ||||| ||||||  |||||||||| |||||| |||||||||    
T  54397920 ccacaactccaatcaagtttacctagatggatggttaaaggatacccaagttcagaaaacaaaatccactcctaactccaatcaagtttaccttgatgga 54397821  T
Q  135 tggttgaaagatacc 149  Q
    ||| | |||||||||    
T  54397820 tggctaaaagatacc 54397806  T

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Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 44 - 147
Target Start/End: Complemental strand, 54397293 - 54397190
Alignment:
Q  44 caatcaggcttaccttgatggctggttaaaagatagccgggtccagaaagcaaaacccactcacaactccaatcgagtttatcttgatggatggttgaaa 143  Q
    |||||| | |||||||||||||||| | ||||||  || | |  ||||||||||| | || |  |||||||||| || ||||||||||||||||||||||    
T  54397293 caatcaagtttaccttgatggctggctgaaagatgcccagcttgagaaagcaaaatcgaccccaaactccaatcaagcttatcttgatggatggttgaaa 54397194  T
Q  144 gata 147  Q
    ||||    
T  54397193 gata 54397190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 44 - 147
Target Start/End: Complemental strand, 54397431 - 54397328
Alignment:
Q  44 caatcaggcttaccttgatggctggttaaaagatagccgggtccagaaagcaaaacccactcacaactccaatcgagtttatcttgatggatggttgaaa 143  Q
    |||||| | |||||||||||||||| | ||||||  || | |  ||||||||||| | || |  |||||||||| || ||||||||||||||||||||||    
T  54397431 caatcaagtttaccttgatggctggctgaaagatgcccagcttgagaaagcaaaatcgaccccaaactccaatcaagcttatcttgatggatggttgaaa 54397332  T
Q  144 gata 147  Q
    ||||    
T  54397331 gata 54397328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 112 - 147
Target Start/End: Complemental strand, 54397087 - 54397052
Alignment:
Q  112 ccaatcgagtttatcttgatggatggttgaaagata 147  Q
    |||||| |||||||||||||||||||||||||||||    
T  54397087 ccaatcaagtttatcttgatggatggttgaaagata 54397052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 146
Target Start/End: Complemental strand, 54397842 - 54397740
Alignment:
Q  44 caatcaggcttaccttgatggctggttaaaagatagccgggtccagaaagcaaaacccactcacaactccaatcgagtttatcttgatggatggttgaaa 143  Q
    |||||| | |||||||||||| ||| ||||||||| ||  ||  ||||||||||| ||||     |||| |||| |||||| ||||||||||||||||||    
T  54397842 caatcaagtttaccttgatggatggctaaaagatacccaagttgagaaagcaaaatccacctctgactctaatcaagtttaccttgatggatggttgaaa 54397743  T
Q  144 gat 146  Q
    |||    
T  54397742 gat 54397740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 159
Target Start/End: Complemental strand, 54397988 - 54397934
Alignment:
Q  105 cacaactccaatcgagtttatcttgatggatggttgaaagataccaaggatcaaa 159  Q
    |||||| |||||| |||||| || ||||||||| |||||||||||||| ||||||    
T  54397988 cacaacaccaatcaagtttacctcgatggatggctgaaagataccaagaatcaaa 54397934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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