View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11280A_low_59 (Length: 354)
Name: NF11280A_low_59
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_59 |
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Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 10 - 336
Target Start/End: Original strand, 22189608 - 22189934
Alignment:
| Q |
10 |
gcatagacgaaagcactacaactgaatcattttcaataacaatatcaccaacaaagaaaccgtcaacgccgccacctcccaacagcctatgccgcgttgg |
109 |
Q |
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| T |
22189608 |
gcatagacgaaagcactacaactgaatcattttcaataacaatatcgccaacaaagaaaccgtcaacgccgccacctcccaacagcctatgccgcgttgg |
22189707 |
T |
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| Q |
110 |
cagcggcgcaagcgctgttgtggactccgatggcagcggcgttggcgaagctgagtcacggaagcttccttcgtcgaagtacaaaggtgttgtaccacaa |
209 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
22189708 |
cagcggcgcaagcgctgttgtggactctgatggcagcggcgttggcgaagctgagtcacggaagcttccttcttcgaagtacaaaggtgttgtaccacaa |
22189807 |
T |
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| Q |
210 |
ccaaatggtcgttggggagcacagatttacgaaaagcaccagcgtgtgtggcttggaacatttaaccaagaagacgaagctgctaaagcttatgatgttg |
309 |
Q |
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| T |
22189808 |
ccaaatggtcgttggggagcacagatttacgaaaagcaccagcgtgtgtggcttggaacatttaaccaagaagacgaagctgctaaagcttatgatgttg |
22189907 |
T |
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| Q |
310 |
ccgcacaacgtttccgcggaaaagatg |
336 |
Q |
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| T |
22189908 |
ccgcacaacgtttccgcggcaaagatg |
22189934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 174 - 289
Target Start/End: Complemental strand, 41952763 - 41952648
Alignment:
| Q |
174 |
cttccttcgtcgaagtacaaaggtgttgtaccacaaccaaatggtcgttggggagcacagatttacgaaaagcaccagcgtgtgtggcttggaacattta |
273 |
Q |
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| T |
41952763 |
cttccatcgtcgaaatacaaaggcgtggtgccacagcctaacggacgttggggagcacagatttacgagaaacaccagcgtgtgtggcttggtacgttca |
41952664 |
T |
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| Q |
274 |
accaagaagacgaagc |
289 |
Q |
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| T |
41952663 |
atgaagaagacgaagc |
41952648 |
T |
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