View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11280A_low_62 (Length: 349)
Name: NF11280A_low_62
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_62 |
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Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 19 - 337
Target Start/End: Original strand, 1164787 - 1165105
Alignment:
| Q |
19 |
gtttttcaccactcatgcggactcattaaaaggcctcatgaactgattttcatacgtggtgctataagttggggaaaacactccattcggaatatcaatg |
118 |
Q |
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| T |
1164787 |
gtttttcaccactcatggggactcattaaaaggcctcatgaactgattttcatacgtggtgctataagttggggaaaacactccattcggaatatcaatg |
1164886 |
T |
|
| Q |
119 |
tgactgtaactgtgttctttctccctgtctctcggtcttacttctgtcgactttgtgagttctaggaaggaggcttaaccatcacatctgagactgattt |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
1164887 |
tgactgtaactgtgttctttctccctgtctctcggtcttacttctgtcgactttgtgagttctagaaaggaggcttaaccatcacatctgagactgattt |
1164986 |
T |
|
| Q |
219 |
gacatgtttctgcaaagaatgggatgctactgagcaatgttgtcaaatagcggctatatcactattgtgtagcagaattttaacaggcgactattgttcc |
318 |
Q |
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||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1164987 |
gacatgtttctgcgaagaatgggatgctgctgagcaatgttgtcaaatagcggctatatcactattgtgtagcagaattttaacaggcgactattgttcc |
1165086 |
T |
|
| Q |
319 |
gtgatacattatttaatat |
337 |
Q |
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||||||||||||||||||| |
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| T |
1165087 |
gtgatacattatttaatat |
1165105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 146 - 251
Target Start/End: Original strand, 1710367 - 1710473
Alignment:
| Q |
146 |
tctctcggtcttacttctgtcg-actttgtgagttctaggaaggaggcttaaccatcacatctgagactgatttgacatgtttctgcaaagaatgggatg |
244 |
Q |
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| T |
1710367 |
tctctcggtcttacttctgtcctactttgtggatactaggcaggtggcttaaccatcatatctgagaatgattggaaatgtttctgcgaagaatggggtg |
1710466 |
T |
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| Q |
245 |
ctactga |
251 |
Q |
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||||||| |
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| T |
1710467 |
ctactga |
1710473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 300
Target Start/End: Complemental strand, 46645843 - 46645797
Alignment:
| Q |
254 |
aatgttgtcaaatagcggctatatcactattgtgtagcagaatttta |
300 |
Q |
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| T |
46645843 |
aatgttgtcaactagcgggtatagcactattgtgtagcagaatttta |
46645797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 38 - 85
Target Start/End: Original strand, 1710232 - 1710279
Alignment:
| Q |
38 |
gactcattaaaaggcctcatgaactgattttcatacgtggtgctataa |
85 |
Q |
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| T |
1710232 |
gactcattgaaaggcctcctgaactgattctcagacgtggtgctataa |
1710279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 254 - 303
Target Start/End: Original strand, 20989538 - 20989587
Alignment:
| Q |
254 |
aatgttgtcaaatagcggctatatcactattgtgtagcagaattttaaca |
303 |
Q |
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||||||||||||||||||||||| | ||||||| |||| ||||||||||| |
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| T |
20989538 |
aatgttgtcaaatagcggctatagccctattgtatagcggaattttaaca |
20989587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 303
Target Start/End: Original strand, 26174972 - 26175020
Alignment:
| Q |
255 |
atgttgtcaaatagcggctatatcactattgtgtagcagaattttaaca |
303 |
Q |
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||||||||||||||| |||||| |||||||||| |||||||||| |||| |
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| T |
26174972 |
atgttgtcaaatagcagctatagcactattgtgaagcagaatttgaaca |
26175020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 303
Target Start/End: Complemental strand, 7264939 - 7264887
Alignment:
| Q |
253 |
caatgttgtcaaatagcggc--tatatcactattgtgtagcagaattttaaca |
303 |
Q |
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|||| |||||||| |||||| ||||||||||| ||||||||||||||||||| |
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| T |
7264939 |
caatattgtcaaaaagcggcgctatatcactatagtgtagcagaattttaaca |
7264887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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