View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11280A_low_63 (Length: 347)
Name: NF11280A_low_63
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_63 |
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Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 37 - 342
Target Start/End: Complemental strand, 40096938 - 40096633
Alignment:
| Q |
37 |
tttgcaaattgtaatacacactcttcaattcacattttacccggcaaatttatgtgagacccacataatttggtgggatacattttcaaaacagttgaac |
136 |
Q |
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| T |
40096938 |
tttgcaaattgtaatacacactcttcaattcacattttacccggcaaatttatgtgagacccacataatttggtgggatacattttcaaaacagttgaac |
40096839 |
T |
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| Q |
137 |
tttttagagacatagaatattcaaaatcaacttcatgtttctataattcagtcatggtaatttcattttgactttgacattattatttctctgacagaac |
236 |
Q |
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| T |
40096838 |
tttttagagaaatagaatagtcaaaatcaacttcatgtttctataattcagtcatggtaatttcattttgactttgacattattatttctctgacagaac |
40096739 |
T |
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| Q |
237 |
tatcttgaatttcaaccaatgagaaactgtgttggaaagaatgtgttgctagcactcctcttaaaataatcttacatgaacttggattttcaaagaccaa |
336 |
Q |
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||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40096738 |
tattttgaatttcaaccaatgagaaactgtgtttgaaagaatgtgttgctagcactcctcttaaaataatcttacatgaacttggattttcaaagaccaa |
40096639 |
T |
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| Q |
337 |
catcgt |
342 |
Q |
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|||||| |
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| T |
40096638 |
catcgt |
40096633 |
T |
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