View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11280A_low_66 (Length: 344)

Name: NF11280A_low_66
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11280A_low_66
NF11280A_low_66
[»] chr8 (7 HSPs)
chr8 (9-344)||(12199845-12200180)
chr8 (9-344)||(12444273-12444608)
chr8 (9-344)||(12194839-12195173)
chr8 (9-344)||(12439267-12439601)
chr8 (61-172)||(15348452-15348563)
chr8 (52-176)||(4032289-4032413)
chr8 (76-104)||(41311566-41311594)
[»] chr4 (34 HSPs)
chr4 (43-172)||(7904604-7904733)
chr4 (47-172)||(7238097-7238222)
chr4 (47-172)||(7770980-7771105)
chr4 (52-172)||(45372434-45372554)
chr4 (75-172)||(7789693-7789790)
chr4 (73-176)||(48170959-48171065)
chr4 (85-172)||(7822583-7822670)
chr4 (50-172)||(7774206-7774328)
chr4 (85-169)||(7813094-7813178)
chr4 (61-172)||(48862831-48862945)
chr4 (81-181)||(49044597-49044697)
chr4 (69-172)||(7765219-7765322)
chr4 (85-172)||(7800251-7800338)
chr4 (78-172)||(7907932-7908026)
chr4 (85-176)||(48891023-48891114)
chr4 (85-172)||(49041515-49041602)
chr4 (50-172)||(7877299-7877421)
chr4 (62-172)||(48156804-48156914)
chr4 (73-151)||(48735713-48735791)
chr4 (85-172)||(7786057-7786144)
chr4 (61-167)||(48902540-48902646)
chr4 (87-152)||(49048996-49049061)
chr4 (87-181)||(48148050-48148147)
chr4 (73-172)||(48870144-48870243)
chr4 (73-172)||(48885830-48885929)
chr4 (55-172)||(45366595-45366715)
chr4 (93-172)||(33134200-33134282)
chr4 (55-172)||(48898306-48898426)
chr4 (84-172)||(37827371-37827459)
chr4 (123-176)||(50251181-50251234)
chr4 (63-156)||(50668635-50668728)
chr4 (52-172)||(45385164-45385284)
chr4 (48-176)||(33133614-33133745)
chr4 (130-181)||(48852316-48852370)
[»] chr3 (4 HSPs)
chr3 (61-181)||(11006330-11006450)
chr3 (61-181)||(11024905-11025025)
chr3 (61-181)||(11015893-11016013)
chr3 (85-169)||(47452287-47452371)
[»] chr5 (6 HSPs)
chr5 (62-172)||(29687642-29687752)
chr5 (55-172)||(29695736-29695853)
chr5 (66-152)||(29712866-29712952)
chr5 (85-171)||(1812039-1812125)
chr5 (93-152)||(42562728-42562787)
chr5 (62-151)||(178610-178699)
[»] chr1 (5 HSPs)
chr1 (87-172)||(24340030-24340115)
chr1 (76-172)||(24322067-24322163)
chr1 (93-172)||(24309799-24309878)
chr1 (112-172)||(24366796-24366856)
chr1 (61-148)||(24415427-24415514)
[»] scaffold0508 (1 HSPs)
scaffold0508 (99-172)||(11890-11963)
[»] chr6 (3 HSPs)
chr6 (76-195)||(21979998-21980117)
chr6 (90-155)||(14193139-14193204)
chr6 (85-181)||(21015390-21015486)
[»] chr7 (1 HSPs)
chr7 (62-151)||(48883373-48883465)


Alignment Details
Target: chr8 (Bit Score: 308; Significance: 1e-173; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 9 - 344
Target Start/End: Original strand, 12199845 - 12200180
Alignment:
Q  9 gagaagaaacacaatcgcatggtgaagatgaaagagacgttgtatattccttatgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttt 108  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12199845 gagaagaaatacaatcgcatggtgaagatgaaagagacgttgtatattccttatgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttt 12199944  T
Q  109 tatgtttcaaatgtgtttgtaagtcatggttttctcttatctctgatcctcactttgcaaattcgcatgttgatgtttcctccgcaagaattgtgttaat 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12199945 tatgtttcaaatgtgtttgtaagtcatggttttctcttatctctgatcctcactttgcaaattcgcatgttgatgtttcctccgcaagaattgtgttaat 12200044  T
Q  209 ttcaagaactccatctcctgttggaattcgctctatagattttgaaacatccattaaccatgattccttttcactggaccataattttctgcttcacaga 308  Q
    ||||||||||||| || ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12200045 ttcaagaactccacctactgttgggattcgttctatagattttgaaacatccattaaccatgattccttttcactggaccataattttctgcttcacaga 12200144  T
Q  309 ggttacgatttctatgaaattaaaggttcatgcaga 344  Q
    |||||| ||||| |||||||||||||||||||||||    
T  12200145 ggttactatttccatgaaattaaaggttcatgcaga 12200180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 9 - 344
Target Start/End: Original strand, 12444273 - 12444608
Alignment:
Q  9 gagaagaaacacaatcgcatggtgaagatgaaagagacgttgtatattccttatgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttt 108  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12444273 gagaagaaatacaatcgcatggtgaagatgaaagagacgttgtatattccttatgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttt 12444372  T
Q  109 tatgtttcaaatgtgtttgtaagtcatggttttctcttatctctgatcctcactttgcaaattcgcatgttgatgtttcctccgcaagaattgtgttaat 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12444373 tatgtttcaaatgtgtttgtaagtcatggttttctcttatctctgatcctcactttgcaaattcgcatgttgatgtttcctccgcaagaattgtgttaat 12444472  T
Q  209 ttcaagaactccatctcctgttggaattcgctctatagattttgaaacatccattaaccatgattccttttcactggaccataattttctgcttcacaga 308  Q
    ||||||||||||| || ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12444473 ttcaagaactccacctactgttgggattcgttctatagattttgaaacatccattaaccatgattccttttcactggaccataattttctgcttcacaga 12444572  T
Q  309 ggttacgatttctatgaaattaaaggttcatgcaga 344  Q
    |||||| ||||| |||||||||||||||||||||||    
T  12444573 ggttactatttccatgaaattaaaggttcatgcaga 12444608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 9 - 344
Target Start/End: Original strand, 12194839 - 12195173
Alignment:
Q  9 gagaagaaacacaatcgcatggtgaagatgaaagagacgttgtatattccttatgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttt 108  Q
    ||||||||  ||| |||||||| |||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  12194839 gagaagaattacactcgcatggcgaagatgaaagagacgttatatcttccttctgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttt 12194938  T
Q  109 tatgtttcaaatgtgtttgtaagtcatggttttctcttatctctgatcctcactttgcaaattcgcatgttgatgtttcctccgcaagaattgtgttaat 208  Q
    |||||||||||||  |||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||| | |||| ||||||||  ||    
T  12194939 tatgtttcaaatgcatttgtaagtcatggttatctcttatctctgatccacactttgcaaattcacatgttgatgtttccgcagcaaaaattgtgtccat 12195038  T
Q  209 ttcaagaactccatctcctgttggaattcgctctatagattttgaaacatccattaaccatgattccttttcactggaccataattttctgcttcacaga 308  Q
     |||||||||| | ||| || || |||||||| |||||||||||||||||||||||||||||||||  |||| |||||||||| |||||| ||||  | |    
T  12195039 atcaagaactcgacctcttgctgaaattcgctttatagattttgaaacatccattaaccatgattctgtttcgctggaccatagttttctacttccaaaa 12195138  T
Q  309 ggttacgatttctatgaaattaaaggttcatgcaga 344  Q
    |||||   ||| ||||||||||||||||| ||||||    
T  12195139 ggtta-tttttttatgaaattaaaggttcgtgcaga 12195173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 9 - 344
Target Start/End: Original strand, 12439267 - 12439601
Alignment:
Q  9 gagaagaaacacaatcgcatggtgaagatgaaagagacgttgtatattccttatgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttt 108  Q
    ||||||||  ||| |||||||| |||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  12439267 gagaagaattacactcgcatggcgaagatgaaagagacgttatatcttccttctgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttt 12439366  T
Q  109 tatgtttcaaatgtgtttgtaagtcatggttttctcttatctctgatcctcactttgcaaattcgcatgttgatgtttcctccgcaagaattgtgttaat 208  Q
    |||||||||||||  |||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||| | |||| ||||||||  ||    
T  12439367 tatgtttcaaatgcatttgtaagtcatggttatctcttatctctgatccacactttgcaaattcacatgttgatgtttccgcagcaaaaattgtgtccat 12439466  T
Q  209 ttcaagaactccatctcctgttggaattcgctctatagattttgaaacatccattaaccatgattccttttcactggaccataattttctgcttcacaga 308  Q
     |||||||||| | ||| || || |||||||| |||||||||||||||||||||||||||||||||  |||| |||||||||| |||||| ||||  | |    
T  12439467 atcaagaactcgacctcttgctgaaattcgctttatagattttgaaacatccattaaccatgattctgtttcgctggaccatagttttctacttccaaaa 12439566  T
Q  309 ggttacgatttctatgaaattaaaggttcatgcaga 344  Q
    |||||   ||| ||||||||||||||||| ||||||    
T  12439567 ggtta-tttttttatgaaattaaaggttcgtgcaga 12439601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 61 - 172
Target Start/End: Original strand, 15348452 - 15348563
Alignment:
Q  61 atgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctgatcctca 160  Q
    ||||||||||  ||||||| ||   |||||| ||||||||||||||| || |||||||||| ||||||||||| |||||||||||||||||||||||| |    
T  15348452 atgaattaatagttcaaattctagagaggttaccggtgaagtctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctgatcctta 15348551  T
Q  161 ctttgcaaattc 172  Q
    ||| ||||||||    
T  15348552 cttcgcaaattc 15348563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 52 - 176
Target Start/End: Complemental strand, 4032413 - 4032289
Alignment:
Q  52 atattccttatgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctc 151  Q
    |||| ||| ||||||| ||||| |||||| | |||||  | ||  ||||||||||| || ||||||| ||||||||||| || |||||  ||||||| ||    
T  4032413 atatgcctcatgaattgatcatccaaatcttactgagactaccaatgaagtctcttatacgtttcaagtgtgtttgtaaatcttggttaactcttatatc 4032314  T
Q  152 tgatcctcactttgcaaattcgcat 176  Q
    |||||||||||||||||||||||||    
T  4032313 tgatcctcactttgcaaattcgcat 4032289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 104
Target Start/End: Complemental strand, 41311594 - 41311566
Alignment:
Q  76 aaatcctgctgaggttgccggtgaagtct 104  Q
    |||||||||||||||||||||||||||||    
T  41311594 aaatcctgctgaggttgccggtgaagtct 41311566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 43 - 172
Target Start/End: Original strand, 7904604 - 7904733
Alignment:
Q  43 agacgttgtatattccttatgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttc 142  Q
    ||||||||||| |||||  |||||| || ||||||||| || || ||||||| |||||||||||| || ||||||||||||||||||||| |||||||||    
T  7904604 agacgttgtatcttcctcgtgaattgattattcaaatcttgatgtggttgcctgtgaagtctcttatacgtttcaaatgtgtttgtaagttatggttttc 7904703  T
Q  143 tcttatctctgatcctcactttgcaaattc 172  Q
    ||||||||||||||||||||||||||||||    
T  7904704 tcttatctctgatcctcactttgcaaattc 7904733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 47 - 172
Target Start/End: Complemental strand, 7238222 - 7238097
Alignment:
Q  47 gttgtatattccttatgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctctt 146  Q
    ||||||| | ||| ||||| ||||||| ||||| ||| |||||||||| |||||||||||| | ||||||||||||||||||||||| ||||||||||||    
T  7238222 gttgtatctgcctcatgaactaatcatccaaattctgatgaggttgccagtgaagtctcttatctgtttcaaatgtgtttgtaagtcttggttttctctt 7238123  T
Q  147 atctctgatcctcactttgcaaattc 172  Q
    |||||||| |||||||||||||||||    
T  7238122 atctctgaccctcactttgcaaattc 7238097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 47 - 172
Target Start/End: Original strand, 7770980 - 7771105
Alignment:
Q  47 gttgtatattccttatgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctctt 146  Q
    ||||||| | ||| ||||| |||| || ||||| ||| ||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||    
T  7770980 gttgtatctgcctcatgaactaataatccaaattctgatgaggttgccggtgaagtctcttatatgtttcaaatgcgtttgtaagtcttggttttctctt 7771079  T
Q  147 atctctgatcctcactttgcaaattc 172  Q
    ||||||||||||||||||| ||||||    
T  7771080 atctctgatcctcactttgaaaattc 7771105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 52 - 172
Target Start/End: Complemental strand, 45372554 - 45372434
Alignment:
Q  52 atattccttatgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctc 151  Q
    |||| ||| ||||||| || |||||||| || || ||||||||||||||||||||| || |||||||||||||||||||||| ||||||||| |||||||    
T  45372554 atatgcctcatgaattgatgattcaaattctactaaggttgccggtgaagtctcttatacgtttcaaatgtgtttgtaagtcttggttttctattatctc 45372455  T
Q  152 tgatcctcactttgcaaattc 172  Q
    ||||||||| |||||||||||    
T  45372454 tgatcctcattttgcaaattc 45372434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 75 - 172
Target Start/End: Original strand, 7789693 - 7789790
Alignment:
Q  75 caaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctgatcctcactttgcaaattc 172  Q
    ||||| ||| ||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||| ||||||| ||||||||||||| ||||||    
T  7789693 caaattctgatgaggttgccggtgaagtctcttatatgtttcaaatgcgtttgtaagtcttggttttcttttatctccgatcctcactttgaaaattc 7789790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 73 - 176
Target Start/End: Complemental strand, 48171065 - 48170959
Alignment:
Q  73 ttcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctc---tgatcctcactttgcaaa 169  Q
    ||||||| |||||||||||  |||||||||||||| || |||||||||||||||||||||| |||||| ||||||||||   ||||||||||||||||||    
T  48171065 ttcaaattctgctgaggttatcggtgaagtctcttctacgtttcaaatgtgtttgtaagtcttggtttgctcttatctctcatgatcctcactttgcaaa 48170966  T
Q  170 ttcgcat 176  Q
    |||||||    
T  48170965 ttcgcat 48170959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 85 - 172
Target Start/End: Original strand, 7822583 - 7822670
Alignment:
Q  85 tgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctgatcctcactttgcaaattc 172  Q
    |||||||||||||||||| |||| || ||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  7822583 tgaggttgccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctcttatctctgatccccactttgcaaattc 7822670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 50 - 172
Target Start/End: Complemental strand, 7774328 - 7774206
Alignment:
Q  50 gtatattccttatgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatc 149  Q
    |||| ||||| ||||||| || ||||||||| || || || ||||||||||||||||| |   |||||||||||||||||||  ||||||||||||||||    
T  7774328 gtatcttcctcatgaattgattattcaaatcttgatgcggctgccggtgaagtctcttattcatttcaaatgtgtttgtaagctatggttttctcttatc 7774229  T
Q  150 tctgatcctcactttgcaaattc 172  Q
    |||||||| || |||||||||||    
T  7774228 tctgatccccattttgcaaattc 7774206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 85 - 169
Target Start/End: Original strand, 7813094 - 7813178
Alignment:
Q  85 tgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctgatcctcactttgcaaa 169  Q
    |||||||||||||||||| |||| || ||||||| ||||||||||| ||||||||||||||||||||||| || |||||||||||    
T  7813094 tgaggttgccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctcttatctctgaaccccactttgcaaa 7813178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 61 - 172
Target Start/End: Original strand, 48862831 - 48862945
Alignment:
Q  61 atgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctc---tgatcc 157  Q
    ||||||| ||||| | ||||||||| ||||| ||||||||||||||| |  |||||||||| ||||| ||||| |||||||||||||||||   ||||||    
T  48862831 atgaattgatcatcctaatcctgctaaggttaccggtgaagtctcttattcgtttcaaatgcgtttgcaagtcttggttttctcttatctctcatgatcc 48862930  T
Q  158 tcactttgcaaattc 172  Q
    |||||||||||||||    
T  48862931 tcactttgcaaattc 48862945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 81 - 181
Target Start/End: Complemental strand, 49044697 - 49044597
Alignment:
Q  81 ctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctgatcctcactttgcaaattcgcatgttg 180  Q
    |||||||||||||| |||| |||||||||| ||||||| ||||||||||||| ||||||||||||||||||| |  | |||||||||||||| ||| |||    
T  49044697 ctgctgaggttgccagtgatgtctcttttacgtttcaagtgtgtttgtaagttatggttttctcttatctctcaaacccactttgcaaattcacattttg 49044598  T
Q  181 a 181  Q
    |    
T  49044597 a 49044597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 69 - 172
Target Start/End: Original strand, 7765219 - 7765322
Alignment:
Q  69 atcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctgatcctcactttgcaa 168  Q
    ||||||||| | ||| ||||||| |||||||||||||| |||  |||||| ||  ||||||||| |||||||||| ||||||||||||||||||||||||    
T  7765219 atcattcaatttctgttgaggttaccggtgaagtctctcttagttttcaagtgcatttgtaagttatggttttctattatctctgatcctcactttgcaa 7765318  T
Q  169 attc 172  Q
    ||||    
T  7765319 attc 7765322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 85 - 172
Target Start/End: Original strand, 7800251 - 7800338
Alignment:
Q  85 tgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctgatcctcactttgcaaattc 172  Q
    |||||||||||||||||| |||| || ||||||| ||||||||||| ||||||||||||||| |||||||||| | ||||||||||||    
T  7800251 tgaggttgccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctcttgtctctgatccccgctttgcaaattc 7800338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 78 - 172
Target Start/End: Original strand, 7907932 - 7908026
Alignment:
Q  78 atcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctgatcctcactttgcaaattc 172  Q
    ||||| ||||||||||||||||||||||||  | ||||||| | |||| ||||||||||||||||||||||||||| ||| || |||||||||||    
T  7907932 atcctactgaggttgccggtgaagtctcttacacgtttcaagtctgttcgtaagtcatggttttctcttatctctgctccccattttgcaaattc 7908026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 85 - 176
Target Start/End: Original strand, 48891023 - 48891114
Alignment:
Q  85 tgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctgatcctcactttgcaaattcgcat 176  Q
    |||||||  |||| ||||||||| || |||||||||| ||||||||||| |||||||||||| |||| |||||||| |||||||||||||||    
T  48891023 tgaggttatcggtaaagtctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttgtctcagatcctcattttgcaaattcgcat 48891114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 85 - 172
Target Start/End: Complemental strand, 49041602 - 49041515
Alignment:
Q  85 tgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctgatcctcactttgcaaattc 172  Q
    |||| ||||| |||||||||||| | ||||||||||| ||||| ||||| ||||||||||||||||||||||| || |||||||||||    
T  49041602 tgagattgccagtgaagtctcttatttgtttcaaatgcgtttgcaagtcttggttttctcttatctctgatccccattttgcaaattc 49041515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 50 - 172
Target Start/End: Original strand, 7877299 - 7877421
Alignment:
Q  50 gtatattccttatgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatc 149  Q
    |||| ||||| ||||||| || || ||||||||| |  |||||| ||||||||||||| || ||||||||||  ||||||||  ||||||||||||||||    
T  7877299 gtatcttcctcatgaattgattatccaaatcctgatttggttgctggtgaagtctcttatacgtttcaaatgcatttgtaagctatggttttctcttatc 7877398  T
Q  150 tctgatcctcactttgcaaattc 172  Q
    ||||||||  | |||||||||||    
T  7877399 tctgatcccaattttgcaaattc 7877421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 62 - 172
Target Start/End: Complemental strand, 48156914 - 48156804
Alignment:
Q  62 tgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctgatcctcac 161  Q
    |||||| || |||||||||||  |  |||| ||||||||||||||| || ||||||| || ||||||||||| ||||||||||||||||| ||| ||||     
T  48156914 tgaattgataattcaaatccttttatggttaccggtgaagtctcttctacgtttcaagtgcgtttgtaagtcttggttttctcttatctccgatactcat 48156815  T
Q  162 tttgcaaattc 172  Q
    |||||||||||    
T  48156814 tttgcaaattc 48156804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 73 - 151
Target Start/End: Complemental strand, 48735791 - 48735713
Alignment:
Q  73 ttcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctc 151  Q
    ||||||| || |||||||| ||||||||||||||| |  |||||||||||||||||||||| |||||||||||||||||    
T  48735791 ttcaaattcttctgaggttaccggtgaagtctcttattcgtttcaaatgtgtttgtaagtcttggttttctcttatctc 48735713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 85 - 172
Target Start/End: Original strand, 7786057 - 7786144
Alignment:
Q  85 tgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctgatcctcactttgcaaattc 172  Q
    |||||||||||||||| |||||| |||  |||||||| |||||||||  |||| ||||| |||||||||||||||| |||||||||||    
T  7786057 tgaggttgccggtgaaatctcttatattgttcaaatgcgtttgtaagctatggatttctattatctctgatcctcaatttgcaaattc 7786144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 61 - 167
Target Start/End: Original strand, 48902540 - 48902646
Alignment:
Q  61 atgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctgatcctca 160  Q
    ||||||| ||||| |||||  ||| | |||||||||| ||||||||  |  |||||||||||||||||||||| |||||||||||||| |||||||  ||    
T  48902540 atgaattgatcatccaaattttgcagtggttgccggtaaagtctctcattcgtttcaaatgtgtttgtaagtcttggttttctcttatatctgatcagca 48902639  T
Q  161 ctttgca 167  Q
    |||||||    
T  48902640 ctttgca 48902646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 87 - 152
Target Start/End: Complemental strand, 49049061 - 49048996
Alignment:
Q  87 aggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctct 152  Q
    ||||||| ||||| |||||||||| ||||||| ||||||||||||| |||||||||||||||||||    
T  49049061 aggttgctggtgatgtctcttttacgtttcaagtgtgtttgtaagttatggttttctcttatctct 49048996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 87 - 181
Target Start/End: Complemental strand, 48148147 - 48148050
Alignment:
Q  87 aggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctc---tgatcctcactttgcaaattcgcatgttga 181  Q
    ||||| || |||||||||||| |  ||||||||||||| |||||||| |||||||||||||||||   |||||||||||| |||||||| ||| ||||    
T  48148147 aggttaccagtgaagtctcttattcgtttcaaatgtgtctgtaagtcttggttttctcttatctctcatgatcctcacttcgcaaattcacattttga 48148050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 73 - 172
Target Start/End: Original strand, 48870144 - 48870243
Alignment:
Q  73 ttcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctgatcctcactttgcaaattc 172  Q
    ||||||| ||||||||| | |||||||| |||||| |  |||||||||| ||||||||||| ||||||| ||||||||| ||||| |  |||||||||||    
T  48870144 ttcaaattctgctgaggctaccggtgaattctcttattcgtttcaaatgcgtttgtaagtcttggttttttcttatctccgatcccctttttgcaaattc 48870243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 73 - 172
Target Start/End: Original strand, 48885830 - 48885929
Alignment:
Q  73 ttcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctgatcctcactttgcaaattc 172  Q
    ||||||| ||||||||| | |||||||| |||||| |  |||||||||| ||||||||||| ||||||| ||||||||| ||||| |  |||||||||||    
T  48885830 ttcaaattctgctgaggctaccggtgaattctcttattcgtttcaaatgcgtttgtaagtcttggttttttcttatctccgatcccctttttgcaaattc 48885929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 55 - 172
Target Start/End: Complemental strand, 45366715 - 45366595
Alignment:
Q  55 ttccttatgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctc--- 151  Q
    ||||| ||||||| || || |||||||| || ||||| || |||||||||||| || ||||||| || ||||||||||  |||||||||||||||||       
T  45366715 ttcctcatgaattgatgatccaaatcctactaaggttaccagtgaagtctcttatacgtttcaagtgcgtttgtaagtattggttttctcttatctctcg 45366616  T
Q  152 tgatcctcactttgcaaattc 172  Q
    |||| | ||||||||||||||    
T  45366615 tgattcacactttgcaaattc 45366595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 93 - 172
Target Start/End: Complemental strand, 33134282 - 33134200
Alignment:
Q  93 ccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctc---tgatcctcactttgcaaattc 172  Q
    ||||||||||||||| |  |||||||||| ||||||||| | || ||||||||||||||   |||||||||||||||||||||    
T  33134282 ccggtgaagtctcttattcgtttcaaatgcgtttgtaagccttgattttctcttatctctaatgatcctcactttgcaaattc 33134200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 55 - 172
Target Start/End: Original strand, 48898306 - 48898426
Alignment:
Q  55 ttccttatgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctc--- 151  Q
    ||||| |||||||  |||||||||| ||||||||  | || ||||||||||||  | ||||||| |||||||||||||| ||||| || ||||||||       
T  48898306 ttcctcatgaattggtcattcaaattctgctgagtctacctgtgaagtctcttacacgtttcaagtgtgtttgtaagtcttggttctcacttatctctca 48898405  T
Q  152 tgatcctcactttgcaaattc 172  Q
    |||| | ||||||||||||||    
T  48898406 tgatgcccactttgcaaattc 48898426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 84 - 172
Target Start/End: Complemental strand, 37827459 - 37827371
Alignment:
Q  84 ctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctgatcctcactttgcaaattc 172  Q
    ||||||||| | |||||||||||| || |||| | ||| |||||||||||||||||  ||||||| ||| ||||  |||||||||||||    
T  37827459 ctgaggttgtcagtgaagtctcttataagttttacatgcgtttgtaagtcatggttaactcttatatctaatcccgactttgcaaattc 37827371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 123 - 176
Target Start/End: Complemental strand, 50251234 - 50251181
Alignment:
Q  123 gtttgtaagtcatggttttctcttatctctgatcctcactttgcaaattcgcat 176  Q
    |||| |||||| ||||||||||||||||||||||| |||| |||||||| ||||    
T  50251234 gtttctaagtcttggttttctcttatctctgatccccactgtgcaaatttgcat 50251181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 63 - 156
Target Start/End: Original strand, 50668635 - 50668728
Alignment:
Q  63 gaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctgatc 156  Q
    ||||| |||||||||||  || |||||||||| ||||| | |||| || ||||||| || |||||||| || ||||||||||| ||||| ||||    
T  50668635 gaattgatcattcaaattttggtgaggttgcccgtgaaatatcttatacgtttcaagtgcgtttgtaaatcttggttttctctcatctccgatc 50668728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 172
Target Start/End: Complemental strand, 45385284 - 45385164
Alignment:
Q  52 atattccttatgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctc 151  Q
    |||| ||| ||||||| || || |||||||| || ||||| || || ||||||||  || |||||||||  ||||||||||| |||||||||||  ||||    
T  45385284 atatgcctaatgaattgatgatccaaatcctactaaggttaccagttaagtctctcatacgtttcaaatccgtttgtaagtcttggttttctctcgtctc 45385185  T
Q  152 tgatcctcactttgcaaattc 172  Q
     ||| | ||||||||| ||||    
T  45385184 cgatacccactttgcatattc 45385164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 176
Target Start/End: Original strand, 33133614 - 33133745
Alignment:
Q  48 ttgtatattccttatgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctctta 147  Q
    |||||| | ||| ||||||| ||||| |  || ||||| ||||| ||  ||||||||||| |  |||||||||   ||||||||   |||||||||||||    
T  33133614 ttgtatctgcctcatgaattgatcatccttattctgctaaggttaccaatgaagtctcttattcgtttcaaattcatttgtaagctttggttttctctta 33133713  T
Q  148 tctc---tgatcctcactttgcaaattcgcat 176  Q
    ||||   ||||| |||||||||||||||||||    
T  33133714 tctctaatgatcttcactttgcaaattcgcat 33133745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 181
Target Start/End: Original strand, 48852316 - 48852370
Alignment:
Q  130 agtcatggttttctcttatctctga---tcctcactttgcaaattcgcatgttga 181  Q
    |||| |||||||||||||||||| |   |||||||||||||||||||||| ||||    
T  48852316 agtcttggttttctcttatctctcacaatcctcactttgcaaattcgcattttga 48852370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 3e-33; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 61 - 181
Target Start/End: Complemental strand, 11006450 - 11006330
Alignment:
Q  61 atgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctgatcctca 160  Q
    ||||||| ||||| |||||| || ||||||||||||||||||| ||| || ||||||| ||||||||||||||||||||  |||||||||||||||||||    
T  11006450 atgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatctctgatcctca 11006351  T
Q  161 ctttgcaaattcgcatgttga 181  Q
    ||||||||| |||||| ||||    
T  11006350 ctttgcaaaatcgcattttga 11006330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 61 - 181
Target Start/End: Complemental strand, 11025025 - 11024905
Alignment:
Q  61 atgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctgatcctca 160  Q
    ||||||| ||||| |||||| || ||||||| ||||||||||||||  || |||||||||| |||||||||||||||||  ||||||||||||||| | |    
T  11025025 atgaattgatcatacaaatcatgttgaggttaccggtgaagtctctcatacgtttcaaatgcgtttgtaagtcatggttagctcttatctctgatcataa 11024926  T
Q  161 ctttgcaaattcgcatgttga 181  Q
    ||||||||| |||||| ||||    
T  11024925 ctttgcaaaatcgcattttga 11024905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 61 - 181
Target Start/End: Complemental strand, 11016013 - 11015893
Alignment:
Q  61 atgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctgatcctca 160  Q
    ||||||| || || |||||| || ||||||| ||||||||||||||  || |||||||||| ||||||||||||| |||  ||||||||||||||| | |    
T  11016013 atgaattgataatacaaatcatgttgaggttaccggtgaagtctctcatacgtttcaaatgcgtttgtaagtcattgttagctcttatctctgatcataa 11015914  T
Q  161 ctttgcaaattcgcatgttga 181  Q
    ||||||||| |||||| ||||    
T  11015913 ctttgcaaaatcgcattttga 11015893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 85 - 169
Target Start/End: Complemental strand, 47452371 - 47452287
Alignment:
Q  85 tgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctgatcctcactttgcaaa 169  Q
    ||||||||||||||||||||||| || | ||||| ||  ||| |||||||||||||||||||||||||||||||| |||||||||    
T  47452371 tgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctgatcctctctttgcaaa 47452287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 62 - 172
Target Start/End: Original strand, 29687642 - 29687752
Alignment:
Q  62 tgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctgatcctcac 161  Q
    |||||| |||||||||||||| || | ||| || |||||||||||| || | ||||| |||||||||||||| ||||||||||| || ||| | ||||||    
T  29687642 tgaattgatcattcaaatccttctaaagttaccagtgaagtctcttatacgcttcaagtgtgtttgtaagtcttggttttctctcatatctcaacctcac 29687741  T
Q  162 tttgcaaattc 172  Q
    |||||||||||    
T  29687742 tttgcaaattc 29687752  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 55 - 172
Target Start/End: Original strand, 29695736 - 29695853
Alignment:
Q  55 ttccttatgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctga 154  Q
    |||||| ||| |||||||||||||||||  | ||||| || || ||||||||| |  |||||||||| |||||||||| |||||| |||||||| ||| |    
T  29695736 ttccttttgagttaatcattcaaatcctattaaggttaccagtcaagtctcttattcgtttcaaatgcgtttgtaagttatggttatctcttatatctca 29695835  T
Q  155 tcctcactttgcaaattc 172  Q
     |||||||||||||||||    
T  29695836 acctcactttgcaaattc 29695853  T

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Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 152
Target Start/End: Complemental strand, 29712952 - 29712866
Alignment:
Q  66 ttaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctct 152  Q
    |||||||||||||||||  | | ||| ||||||||||||||| |  ||||||| || |||||||||| |||||||||||||||||||    
T  29712952 ttaatcattcaaatccttttaatgttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctct 29712866  T

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Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 85 - 171
Target Start/End: Original strand, 1812039 - 1812125
Alignment:
Q  85 tgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctgatcctcactttgcaaatt 171  Q
    ||||||| || ||||||| |||  || ||| |||||| |||||||||| ||||||||||||||||||  |||| |||||||||||||    
T  1812039 tgaggttaccagtgaagtatctcatacgttccaaatgggtttgtaagttatggttttctcttatctcaaatccccactttgcaaatt 1812125  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 93 - 152
Target Start/End: Complemental strand, 42562787 - 42562728
Alignment:
Q  93 ccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctct 152  Q
    |||||||| |||||| |  |||||||||| ||||||||||| ||||||||||| ||||||    
T  42562787 ccggtgaattctcttattcgtttcaaatgcgtttgtaagtcttggttttctctaatctct 42562728  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 151
Target Start/End: Original strand, 178610 - 178699
Alignment:
Q  62 tgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctc 151  Q
    |||||| ||||| |||||||| ||  | || || || ||||||||| |  |||||||||||||||||||||| ||||| ||||| |||||    
T  178610 tgaattgatcatccaaatcctacttcgcttaccagttaagtctcttattcgtttcaaatgtgtttgtaagtcttggttatctctcatctc 178699  T

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Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 87 - 172
Target Start/End: Original strand, 24340030 - 24340115
Alignment:
Q  87 aggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctgatcctcactttgcaaattc 172  Q
    ||||| ||||| ||||||||| |  ||||||||| ||||||||||||||||||||| ||||||||||||  |||||||||||||||    
T  24340030 aggttaccggttaagtctcttattcgtttcaaatctgtttgtaagtcatggttttcacttatctctgataatcactttgcaaattc 24340115  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 76 - 172
Target Start/End: Original strand, 24322067 - 24322163
Alignment:
Q  76 aaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctgatcctcactttgcaaattc 172  Q
    ||||||| || ||||||| ||||||||||||| |  |||||||||| ||||||||||| |||||||||||||||||  ||||||  |||||||||||    
T  24322067 aaatccttctaaggttgctggtgaagtctcttattcgtttcaaatgcgtttgtaagtcttggttttctcttatctcaaatcctcgttttgcaaattc 24322163  T

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Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 93 - 172
Target Start/End: Original strand, 24309799 - 24309878
Alignment:
Q  93 ccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctgatcctcactttgcaaattc 172  Q
    ||||| ||||||||| |  |||||||||  |||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  24309799 ccggttaagtctcttattcgtttcaaatccgtttgtaagttatggttttctcttatctctgattctcactttgcaaattc 24309878  T

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Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 112 - 172
Target Start/End: Original strand, 24366796 - 24366856
Alignment:
Q  112 gtttcaaatgtgtttgtaagtcatggttttctcttatctctgatcctcactttgcaaattc 172  Q
    |||||||||||||||| |||||||||||||||||||||||  ||||| |||||||||||||    
T  24366796 gtttcaaatgtgtttgcaagtcatggttttctcttatctcaaatccttactttgcaaattc 24366856  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 61 - 148
Target Start/End: Original strand, 24415427 - 24415514
Alignment:
Q  61 atgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttat 148  Q
    ||||||| ||||  ||||||||  |||| || ||||| ||||||||| |  |||||||||| ||| ||||||| ||||||||||||||    
T  24415427 atgaattgatcacccaaatcctattgagattaccggttaagtctcttattcgtttcaaatgcgttcgtaagtcttggttttctcttat 24415514  T

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Target: scaffold0508 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 99 - 172
Target Start/End: Original strand, 11890 - 11963
Alignment:
Q  99 aagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctgatcctcactttgcaaattc 172  Q
    ||||||||| |  |||||||||  |||||||||||||||||||||||||||||||||  |||||||||||||||    
T  11890 aagtctcttatccgtttcaaatccgtttgtaagtcatggttttctcttatctctgataatcactttgcaaattc 11963  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 76 - 195
Target Start/End: Complemental strand, 21980117 - 21979998
Alignment:
Q  76 aaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctgatcctcactttgcaaattcgca 175  Q
    |||||||||| ||||  || || |||||||| | | ||||||| |||||||||||||| ||||||||||| |||||| ||||  ||||||| ||||| ||    
T  21980117 aaatcctgctaaggtaaccagtaaagtctctctcacgtttcaagtgtgtttgtaagtcttggttttctctcatctctcatcccaactttgcgaattcaca 21980018  T
Q  176 tgttgatgtttcctccgcaa 195  Q
    | ||||| || || ||||||    
T  21980017 ttttgatcttgccgccgcaa 21979998  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 155
Target Start/End: Complemental strand, 14193204 - 14193139
Alignment:
Q  90 ttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctgat 155  Q
    |||| |||||||||||| ||| |||||||||||||||||||||  ||| |||||||||||| ||||    
T  14193204 ttgctggtgaagtctctcttaggtttcaaatgtgtttgtaagttttggctttctcttatctttgat 14193139  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 85 - 181
Target Start/End: Original strand, 21015390 - 21015486
Alignment:
Q  85 tgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctgatcctcactttgcaaattcgcatgttga 181  Q
    ||||||| ||||| | ||||||| || ||||||| ||||||||||||| || |||||||||||||||| |  | |||||||||| ||| ||| ||||    
T  21015390 tgaggttaccggtcatgtctcttctacgtttcaagtgtgtttgtaagttattgttttctcttatctctcaaacccactttgcaatttcacattttga 21015486  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 62 - 151
Target Start/End: Original strand, 48883373 - 48883465
Alignment:
Q  62 tgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttc---aaatgtgtttgtaagtcatggttttctcttatctc 151  Q
    ||||||||||||||||||  || ||||||| |  ||||||||||||||| |||||   ||||||||||||||| | |||||||||||| ||||    
T  48883373 tgaattaatcattcaaattttggtgaggttacatgtgaagtctcttttacgtttcaaaaaatgtgtttgtaagccttggttttctcttctctc 48883465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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