View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11280A_low_68 (Length: 344)
Name: NF11280A_low_68
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_68 |
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Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 14074194 - 14073853
Alignment:
| Q |
1 |
tttaagtcattgtctttatctgattctttattgtcctctgtgacttaaacatttttcaaagttataaacacaaattaaatgagatcagatttgaaatcaa |
100 |
Q |
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| T |
14074194 |
tttaagtcattgtctttatctgattctttattgtcctctgtgacttaaacatttttcaaagttataaacacaaattaaatgagatcatatttgaaatcaa |
14074095 |
T |
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| Q |
101 |
aagttgaatgttgcaataacatttctatacggtgtatgttaggtgaggacatggtggtagagaagagtacatacagcgcgct-----------gt----- |
184 |
Q |
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| T |
14074094 |
aatttgaatgtttcaataacatttctatacggtgtatgttaggtgaggacatggtggtagagaagagtacatacagcgcatttcggaacacaggtttgga |
14073995 |
T |
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| Q |
185 |
-gagaagctgaaagagatgggtgtggacgaggttatagtgacgggtgtgatgaccaacttgtgctgtgagacaacggcgcgcgaggcctttattagaggc |
283 |
Q |
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| T |
14073994 |
agagaagctgaaagagatgggtgtggacgaggttatagtgacgggtgtgatgactaacttgtgctgtgagacaacggcgcgcgaggcctttattagaggc |
14073895 |
T |
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| Q |
284 |
ttcagggtgtttttctccactgatgcaactgctacctctgat |
325 |
Q |
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| T |
14073894 |
ttcagggtgtttttctccactgatgcaactgctacctctgat |
14073853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 185 - 325
Target Start/End: Complemental strand, 14081469 - 14081329
Alignment:
| Q |
185 |
gagaagctgaaagagatgggtgtggacgaggttatagtgacgggtgtgatgaccaacttgtgctgtgagacaacggcgcgcgaggcctttattagaggct |
284 |
Q |
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| T |
14081469 |
gagaagctgaaagagatgggtgtggacgaggttatagtgacgggtgtgatgactaacttgtgctgtgaaacaacggcgcgcgaggcctttattagaggct |
14081370 |
T |
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| Q |
285 |
tcagggtgtttttctccactgatgcaactgctacctctgat |
325 |
Q |
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| T |
14081369 |
tcagggtgtttttctccactgatgcaactgctacctctgat |
14081329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 248 - 325
Target Start/End: Complemental strand, 14104877 - 14104800
Alignment:
| Q |
248 |
tgtgagacaacggcgcgcgaggcctttattagaggcttcagggtgtttttctccactgatgcaactgctacctctgat |
325 |
Q |
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| T |
14104877 |
tgtgagacaacggcgcatgagacctttattagaggcttcagggtgttcttctccgctgatgcaagtgctacctctgat |
14104800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 179
Target Start/End: Complemental strand, 14081532 - 14081492
Alignment:
| Q |
139 |
ttaggtgaggacatggtggtagagaagagtacatacagcgc |
179 |
Q |
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| T |
14081532 |
ttaggcgaggacatggtggtggagaagagtacatacagcgc |
14081492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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