View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11280A_low_73 (Length: 338)
Name: NF11280A_low_73
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_73 |
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Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 21 - 328
Target Start/End: Original strand, 41734874 - 41735184
Alignment:
| Q |
21 |
atgagatgctagcaaattatgagtacctgttagaatgaagaaaagaataagccaagggagaagagtgattattttcactaatagattttgcttcatcata |
120 |
Q |
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| T |
41734874 |
atgagatgctagcaaattatgagtacctgttataatgaagaaaagaataagccaagggagaagagtgattattttcactaatagattttgcttcatcata |
41734973 |
T |
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| Q |
121 |
ttatgatcagtggcagattgaattggtgatgtcaagatggatggtaaaagtgtataaatactctaccaaggttggcatatagtagattaccaatctg--- |
217 |
Q |
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| T |
41734974 |
ttatgatcagtggcagattgaattggtgatgtcaagatggatggtaaaagtgtataaatactctaccaaggttggcatatggtagattaccaatctgatc |
41735073 |
T |
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| Q |
218 |
attaggccaactatatattgaattggtgtgaagaatatatgactatcgcccatcactagtgaaaaatgggaattacaagataaaagacattttcgcaatt |
317 |
Q |
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| T |
41735074 |
attaggccaactatatattgaattggtgtgaagaatatatgactatcgcccatcactagtgcaaaatgggaattacaagataaaagacattttcgcaatt |
41735173 |
T |
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| Q |
318 |
aaattgatgtc |
328 |
Q |
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| T |
41735174 |
aaattgatgtc |
41735184 |
T |
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