View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11280A_low_74 (Length: 337)
Name: NF11280A_low_74
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_74 |
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Alignment Details
Target: chr6 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 12 - 331
Target Start/End: Complemental strand, 9985583 - 9985264
Alignment:
| Q |
12 |
aatataatttagggcctatcacaattttcttggcctatatggtagcctacaatataatatggacacaaattgtcacaaaaacttggtcactctagggaaa |
111 |
Q |
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| T |
9985583 |
aatataatttagggcctatcacaattttcttggcctatatggtagcctacaatataatatggacacaaattgtcacaaaaacttggtcactctagagaaa |
9985484 |
T |
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| Q |
112 |
gacatggaacataaggtatacatgaagtgcataccccatttacatttttgcatgatgcatgaatttcctctcctatagaagatgttatgttaatcccttc |
211 |
Q |
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| T |
9985483 |
gacatggaacataaggtatgcatgaagtgcatactccatttacatttttgcatgatgcatgaacttcctctcctatagaagatgttatgttaatcccttc |
9985384 |
T |
|
| Q |
212 |
aagtataatgtttgtgcaagttatggcttcatcacaatgtaattgaattacatctttagcaatagatgttcctcttatgttgcggaaagttacatcactt |
311 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9985383 |
aagtataatgtttgtgcaagttatgtcttcatcacaatgtaattgaattgcatgtttagcaatagatgttcctcttatgttgcggaaagttacatcactt |
9985284 |
T |
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| Q |
312 |
actttcactgcatatacact |
331 |
Q |
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||||||||||||||| |||| |
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| T |
9985283 |
actttcactgcatatgcact |
9985264 |
T |
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