View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11280A_low_75 (Length: 336)
Name: NF11280A_low_75
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_75 |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 72 - 297
Target Start/End: Original strand, 1140352 - 1140577
Alignment:
| Q |
72 |
tttcctgttaattcctgtttttgccctcgtgaatccatgctacctatggaacccatctctctctagtgtgaaagtttccattttaatatcaaaagagaaa |
171 |
Q |
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| T |
1140352 |
tttcctgttaattcctgtttttgccctcgtgaatccatgctacctatggaacccatctctctctagtgtgaatgtttcttttttaatatcaaaagagaaa |
1140451 |
T |
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| Q |
172 |
tacatgtgaaagttagtttgagtcatccttgcaatcttcttctaaaaccagttcatttggttgtagtccctgcatccaatcaatgacaaccaaatagtta |
271 |
Q |
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| T |
1140452 |
ttcatgtgaaagttagtttgagtcatccttgcaatcttctcataaaatcagttcatttggttgtagtccctgcatccaatcaatgacaaccaaatagtta |
1140551 |
T |
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| Q |
272 |
gaaagaaagaaacagttatatcaaaa |
297 |
Q |
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| T |
1140552 |
taaagaaagaaacatttatattaaaa |
1140577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 75
Target Start/End: Original strand, 1140240 - 1140272
Alignment:
| Q |
43 |
cactcttgacgatttaatggacggtttcttttc |
75 |
Q |
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| T |
1140240 |
cactcttcacgatttaatggacggtttcttttc |
1140272 |
T |
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