View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11280A_low_79 (Length: 331)
Name: NF11280A_low_79
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_79 |
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Alignment Details
Target: chr7 (Bit Score: 287; Significance: 1e-161; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 12 - 326
Target Start/End: Complemental strand, 4160258 - 4159944
Alignment:
| Q |
12 |
atgaacatgtccccaccaacatatgtcaaattgttatttccacataaattctctacaacctttggacgatcaaaaacaacacatttcaacttagaaaatg |
111 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |
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| T |
4160258 |
atgaacatgtccccaccaacatatgtcaaattgttacttccacataaattctctacaacctttggacgatcaaaaacaacacaagtcaacttaggaaatg |
4160159 |
T |
|
| Q |
112 |
tctcacaaataatcttaccagttgttccatttccaccaccaacatccacaattgattccaacccctcaaacaccaaattacaatctttcattgccaaatt |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
4160158 |
tctcacaaataatcttaccagttgttccatttccaccaccaacatccacaattgattccaacccctcaaacaccaaattgcaatctttcattgccaaatt |
4160059 |
T |
|
| Q |
212 |
aatcatttttgaatcactagccaaagcatcattgtataatgtattatactcagggtttttgttaagaaactcccataaatcacaacctaaattgacagta |
311 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
4160058 |
aatcattttggaatcactagccaaagcatcattgtataatgtattatactcagggtttttgttaagaaactcccataaatcacaacctaaattgacagca |
4159959 |
T |
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| Q |
312 |
aatagagtgagatct |
326 |
Q |
| |
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||||||||||||||| |
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| T |
4159958 |
aatagagtgagatct |
4159944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 12 - 302
Target Start/End: Original strand, 4171744 - 4172034
Alignment:
| Q |
12 |
atgaacatgtccccaccaacatatgtcaaattgttatttccacataaattctctacaacctttggacgatcaaaaacaacacatttcaacttagaaaatg |
111 |
Q |
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||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||| |
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| T |
4171744 |
atgaacatgtccccaccgacatatgtcaaattgttacttccacataaattctctacaacctttggacgatcaaaaacaacacatctcaacttaggatatg |
4171843 |
T |
|
| Q |
112 |
tctcacaaataatcttaccagttgttccatttccaccaccaacatccacaattgattccaacccctcaaacaccaaattacaatctttcattgccaaatt |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||| ||||||||| |
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| T |
4171844 |
tctcacaaataatcttaccagttgttccatttccaccaccaacatccacaattgaatccaacccctcaaacacaaaattgcaatctttcaatgccaaatt |
4171943 |
T |
|
| Q |
212 |
aatcatttttgaatcactagccaaagcatcattgtataatgtattatactcagggtttttgttaagaaactcccataaatcacaacctaaa |
302 |
Q |
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||||||||| ||||||||||||| |||||||||| | ||| ||||||| ||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
4171944 |
aatcattttggaatcactagccatagcatcattgaacaatctattatattcaggatttttgttaagaaactcccataaatcacatcctaaa |
4172034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 13 - 286
Target Start/End: Original strand, 4177368 - 4177641
Alignment:
| Q |
13 |
tgaacatgtccccaccaacatatgtcaaattgttatttccacataaattctctacaacctttggacgatcaaaaacaacacatttcaacttagaaaatgt |
112 |
Q |
| |
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|||||||||||||||||||||| |||||||| || ||||| |||| ||||||||||| | ||| | |||||| |||| |||||||||||||| ||| || |
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| T |
4177368 |
tgaacatgtccccaccaacataagtcaaattattgcttccagataagttctctacaacttgtggcctatcaaacacaatacatttcaacttaggaaaagt |
4177467 |
T |
|
| Q |
113 |
ctcacaaataatcttaccagttgttccatttccaccaccaacatccacaattgattccaacccctcaaacaccaaattacaatctttcattgccaaatta |
212 |
Q |
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|||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| || |||||||| |||| ||||||| ||| |||||| || |
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| T |
4177468 |
ctcacaaataattttaccagtggttccatttccaccaccaacatccacaattgattccaatccatcaaacacaaaatcacaatctctcaatgccaagttt |
4177567 |
T |
|
| Q |
213 |
atcatttttgaatcactagccaaagcatcattgtataatgtattatactcagggtttttgttaagaaactccca |
286 |
Q |
| |
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|||| ||| ||||||||||||| |||||||| || || ||||||| ||||| ||||| | |||||| ||||| |
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|
| T |
4177568 |
atcaatttagaatcactagccattgcatcattaaatgatctattatattcaggatttttatcaagaaaatccca |
4177641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 64 - 234
Target Start/End: Complemental strand, 34343695 - 34343525
Alignment:
| Q |
64 |
ctacaacctttggacgatcaaaaacaacacatttcaacttagaaaatgtctcacaaataatcttaccagttgttccatttccaccaccaacatccacaat |
163 |
Q |
| |
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||||||||| |||| ||||| ||||||||||||||||||||| ||| | |||||| ||||| || | || |||||| |||||||||||||||||||||| |
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| T |
34343695 |
ctacaacctgtggaagatcataaacaacacatttcaacttaggaaaagcctcacatataattctagctgtggttccagttccaccaccaacatccacaat |
34343596 |
T |
|
| Q |
164 |
tgattccaacccctcaaacaccaaattacaatctttcattgccaaattaatcatttttgaatcactagcca |
234 |
Q |
| |
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|| || | ||| ||||||||| | |||||| ||||| |||||||| | ||||| ||||||||||||| |
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| T |
34343595 |
agaatcaatcccttcaaacaccttactacaatttttcaaagccaaattcaccatttgagaatcactagcca |
34343525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 81 - 181
Target Start/End: Complemental strand, 34331071 - 34330971
Alignment:
| Q |
81 |
tcaaaaacaacacatttcaacttagaaaatgtctcacaaataatcttaccagttgttccatttccaccaccaacatccacaattgattccaacccctcaa |
180 |
Q |
| |
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|||||||||| |||||| | ||||| ||| | |||||| ||||| ||| | || ||||||||||||||||||||||||||||| ||||| | |||||||| |
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| T |
34331071 |
tcaaaaacaagacatttgaccttaggaaaagcctcacatataattttagccgtcgttccatttccaccaccaacatccacaatagattctatcccctcaa |
34330972 |
T |
|
| Q |
181 |
a |
181 |
Q |
| |
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| T |
34330971 |
a |
34330971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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