View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11280A_low_83 (Length: 329)
Name: NF11280A_low_83
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_83 |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 13887955 - 13888283
Alignment:
| Q |
1 |
tcatatttgtcttcatttaataagtgattaggtgcagcnnnnnnnn--tattaatgcaaagtaaacatttattttggttcttaaacgtgtgaggtgttgt |
98 |
Q |
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| T |
13887955 |
tcatatttgtcttcatttaataagtgattaggtgcagccaaaaaaaaatattaatgcaaagtaaacagttattttggttcttaaacgtgtgaggtgtcat |
13888054 |
T |
|
| Q |
99 |
tacaatagtatcaaaatcacaaaacgtgtctaaatgcaactattgttaatcaatttgattgttgaatgtgttttgttagtttg----gttcacgaatatc |
194 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| || |
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| T |
13888055 |
tacaatagtatcaaaatcacaaaacgtgtctaaatgcaactattgttaatcaatttgattgttgaatgtgttttgttagttagttcggttcacgaatgtc |
13888154 |
T |
|
| Q |
195 |
ttcttttagtcatttttattgatacacttgaaggtgtttttgtcatgtcaatacatttaaagattgtagtaacaacacctcctatatttatggaccaaaa |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
13888155 |
ttcttttagtcatttttattgatacacttgaaggtgtttttgtcatgtcaatacatttaaagattgtagtaataacacctcctatatttatggaccaaaa |
13888254 |
T |
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| Q |
295 |
tgattgtttactcgattaatattcttcga |
323 |
Q |
| |
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|||||||||||||||||||| | |||||| |
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| T |
13888255 |
tgattgtttactcgattaatgtgcttcga |
13888283 |
T |
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