View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11280A_low_9 (Length: 477)
Name: NF11280A_low_9
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 14 - 472
Target Start/End: Original strand, 3036378 - 3036837
Alignment:
| Q |
14 |
gacatcacatggtgaaaagatggatcaaacactggttgttgagaagattctgagatctttaacaagtaagttcaattctgtggtgtgctctattgaagaa |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
3036378 |
gacatcacatggtgaaaagatggatcaaacactggttgttgagaagattctgagatctttaacaagtaagttcaattatgtggtgtgctctattgaagaa |
3036477 |
T |
|
| Q |
114 |
tctaatgatgtgactgcattcttcatcgatgaactccagagtagcttacttgttcaagaacgacgcataaaatctcagaatcaagaaattgatattgagc |
213 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3036478 |
tctaatgatgtgactgcactcttcatcgatgaacttcagagtagcttacttgttcaagaacgacgcataaaatctcagaatcaagaaattgatattgagc |
3036577 |
T |
|
| Q |
214 |
aagctttgaaggtttcgaatggaggaagaggatctatgggatttggtagaggaagagggcgttcaggtgctagaggaaagggtaggggaagaatcaacac |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
3036578 |
aagctttgaaggtttcgaatggaggaagaggatctatgggatatggtagaggaagagggcattcaggtgctagaggaaagggtaggggaagaatcaacaa |
3036677 |
T |
|
| Q |
314 |
agatcctattgagtgttataagtgtcacgagctgggacactatcagaatgaatgtcccctatggg-gaaaaaatgcaaattatgctcaatttgaagatgg |
412 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
3036678 |
agattctattgagtgttataagtgtcacaagctgggacactatcagaatgaatgtcccctatgggaaaaaaaatgcaaattatgctcaatttgaagatgg |
3036777 |
T |
|
| Q |
413 |
tgaattgcttctgatggctcaatcatgcatgaacacaaatgccaaagatgaggtatggtt |
472 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3036778 |
tgaattgcttctgatggctcaatcatgcatgaacacaaatgccaaagatgaggtatggtt |
3036837 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 14 - 472
Target Start/End: Original strand, 16863125 - 16863584
Alignment:
| Q |
14 |
gacatcacatggtgaaaagatggatcaaacactggttgttgagaagattctgagatctttaacaagtaagttcaattctgtggtgtgctctattgaagaa |
113 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||| || |||| ||| ||||||| ||| | ||| |
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| T |
16863125 |
gacaacacatggtgagaagatggatcaaacacttgttgttgaaaagattctgagatctttaacaagtaaatttaattacgtgctgtgctcaattcatgaa |
16863224 |
T |
|
| Q |
114 |
tctaatgatgtgactgcattcttcatcgatgaactccagagtagcttacttgttcaagaacgacgcataaaatctcagaatcaagaaattgatattgagc |
213 |
Q |
| |
|
|| |||||||| ||| || ||| || ||||||| || || || |||||||||||||||| |||||| ||| |||| |||||||||||||||||||| | |
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|
| T |
16863225 |
tcaaatgatgtaactacactctcaattaatgaacttcatagcagtttacttgttcaagaacaacgcatgaaaactcaaaatcaagaaattgatattgaac |
16863324 |
T |
|
| Q |
214 |
aagctttgaaggtttcgaatggaggaagaggatctatgggatttggtagaggaagagggcgttcaggtgctagaggaaagggtaggggaagaatcaacac |
313 |
Q |
| |
|
|||||||||||| || ||||| |||||||||||| | |||| |||||||||||||||||||||||||| |||||||| |||||| |||||||| |||| |
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|
| T |
16863325 |
aagctttgaaggcatctaatggtggaagaggatctgtaggatatggtagaggaagagggcgttcaggtgttagaggaaggggtagaggaagaattaacaa |
16863424 |
T |
|
| Q |
314 |
agatcctattgagtgtta-taagtgtcacgagctgggacactatcagaatgaatgtcccctatggggaaaaaatgcaaattatgctcaatttgaagatgg |
412 |
Q |
| |
|
| | |||| || || ||||||||| |||||||||||||||| ||||||||||| ||||||| | |||||||| | |||| | | ||||||||||| |
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|
| T |
16863425 |
tggaagtgttgaatgctacaaagtgtcacaagctgggacactatcaaaatgaatgtcctctatgggaagaaaatgcacactatgttgagtttgaagatgg |
16863524 |
T |
|
| Q |
413 |
tgaattgcttctgatggctcaatcatgcatgaacacaaatgccaaagatgaggtatggtt |
472 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
16863525 |
tgaattgcttctgatggctcaatcatgtttgaacacaaatgccaaagatgaggtatggtt |
16863584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 178; Significance: 8e-96; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 23 - 472
Target Start/End: Original strand, 20528758 - 20529205
Alignment:
| Q |
23 |
tggtgaaaagatggatcaaacactggttgttgagaagattctgagatctttaacaagtaagttcaattctgtggtgtgctctattgaagaatctaatgat |
122 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||| ||||| |||||||||||||||| |||||||||| ||||||||| |||||||||||||| |||||| |
|
|
| T |
20528758 |
tggtgaaaagatggatcaaactctgcttgttgaaaagatcttgagatctttaacaagcaagttcaattatgtggtgtgatctattgaagaatccaatgat |
20528857 |
T |
|
| Q |
123 |
gtgactgcattcttcatcgatgaactccagagtagcttacttgttcaagaacgacgcataaaatctcagaatcaagaaattgatattgagcaagctttga |
222 |
Q |
| |
|
||||| || | | ||| ||||| | || ||||| |||||||||||||||| |||||| |||||||| || ||||||| ||||| |||||||||||||| |
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|
| T |
20528858 |
gtgacaacactttccattaatgaattacatagtagtttacttgttcaagaacaacgcatgaaatctcaaaaccaagaaactgatactgagcaagctttga |
20528957 |
T |
|
| Q |
223 |
aggtttcgaatggaggaagaggatctatgggatttggtagaggaagagggcgttcaggtgctagaggaaagggtaggggaagaatcaacacagatcctat |
322 |
Q |
| |
|
||||||| ||||| |||||||||||| |||||| ||| |||||||||||||||||| | ||||||| || | |||||||| |||| |||| | |
|
|
| T |
20528958 |
aggtttctaatggtggaagaggatctgtgggatatgggagaggaagagggcgttcaag-caaagaggaagatgtggaggaagaattaaca-agatttagt |
20529055 |
T |
|
| Q |
323 |
tgagtgttataagtgtcacgagctgggacactatcagaatgaatgtcccctatggggaaaaaatgcaaattatgctcaatttgaagatggtgaattgctt |
422 |
Q |
| |
|
||| || ||||||||||| |||| |||||||||||||||||||||| ||||||| | |||| ||||||||||| ||||||||||||||||||| | | |
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|
| T |
20529056 |
tgaatgcaataagtgtcacaagctaggacactatcagaatgaatgtcatctatgggaaccaaattcaaattatgctgaatttgaagatggtgaatttcat |
20529155 |
T |
|
| Q |
423 |
ctgatggctcaatcatgcatgaacacaaatgccaaagatgaggtatggtt |
472 |
Q |
| |
|
|| ||||||||| |||| |||||||||||| |||||||||||||||||| |
|
|
| T |
20529156 |
ctcatggctcaaacatgattgaacacaaatgtcaaagatgaggtatggtt |
20529205 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 154; Significance: 2e-81; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 14 - 472
Target Start/End: Complemental strand, 40613245 - 40612799
Alignment:
| Q |
14 |
gacatcacatggtgaaaagatggatcaaacactggttgttgagaagattctgagatctttaacaagtaagttcaattctgtggtgtgctctattgaagaa |
113 |
Q |
| |
|
|||| |||||||||| |||||||||||||| ||||||||||| |||||| ||||||||||||||||||| ||||||| ||||||||| || ||||||||| |
|
|
| T |
40613245 |
gacaacacatggtgagaagatggatcaaacgctggttgttgaaaagattttgagatctttaacaagtaaattcaattatgtggtgtgttccattgaagaa |
40613146 |
T |
|
| Q |
114 |
tctaatgatgtgactgcattcttcatcgatgaactccagagtagcttacttgttcaagaacgacgcataaaatctcagaatcaagaaattgatattgagc |
213 |
Q |
| |
|
|| || || || ||| || | | || ||||| | |||||||| |||||||||||||||| || ||| |||||||| |||||||| |||||| |||| | |
|
|
| T |
40613145 |
tcaaacgacgtcactacactatcaattgatgagttgcagagtagtttacttgttcaagaacaacacatgaaatctcaaaatcaagacattgatgttgaac |
40613046 |
T |
|
| Q |
214 |
aagctttgaaggtttcgaatggaggaagaggatctatgggatttggtagaggaagagggcgttcaggtgctagaggaaagggtaggggaagaatcaacac |
313 |
Q |
| |
|
|||||||||||||||| ||||| | |||||| | |||| | ||||||||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
40613045 |
aagctttgaaggtttccaatggtgaaagaggtttcgtggggtatggtagaggaagaggacgttcaggtgctagaggaa------------gaatcaacaa |
40612958 |
T |
|
| Q |
314 |
agatcctattgagtgttataagtgtcacgagctgggacactatcagaatgaatgtcccctatggggaaaaaatgcaaattatgctcaatttgaagatggt |
413 |
Q |
| |
|
|| | ||||||||| |||||||| | || |||||||||| |||||||| ||||| ||||||| | ||||||| || | |||| | |||||||||||| |
|
|
| T |
40612957 |
agcaagtgttgagtgttttaagtgtcgcaagttgggacactaccagaatgagtgtcctctatgggaagaaaatgctaactttgctaagtttgaagatggt |
40612858 |
T |
|
| Q |
414 |
gaattgcttctgatggctcaatcatgcatgaacacaaatgccaaagatgaggtatggtt |
472 |
Q |
| |
|
||||| ||||| ||||| ||||| ||| |||||||||| |||||||||||||||||||| |
|
|
| T |
40612857 |
gaattacttcttatggcccaatcttgcttgaacacaaacgccaaagatgaggtatggtt |
40612799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 100; Significance: 3e-49; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 19 - 226
Target Start/End: Original strand, 20542082 - 20542289
Alignment:
| Q |
19 |
cacatggtgaaaagatggatcaaacactggttgttgagaagattctgagatctttaacaagtaagttcaattctgtggtgtgctctattgaagaatctaa |
118 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||| || ||||||||||| || |
|
|
| T |
20542082 |
cacatggtgagaagatggatcaaacgctggttgttgaaaagattctgagatctttaacaagtaaattcaattatgtggtgtgttccattgaagaatcaaa |
20542181 |
T |
|
| Q |
119 |
tgatgtgactgcattcttcatcgatgaactccagagtagcttacttgttcaagaacgacgcataaaatctcagaatcaagaaattgatattgagcaagct |
218 |
Q |
| |
|
||| || ||| | | | || ||||| | |||||||| |||||||||||||||| |||||| ||||||||||||||||| ||||| |||| |||||| |
|
|
| T |
20542182 |
tgacgtcactacgctatcaattgatgagttgcagagtagtttacttgttcaagaacaacgcatgaaatctcagaatcaagactttgatgttgaacaagct |
20542281 |
T |
|
| Q |
219 |
ttgaaggt |
226 |
Q |
| |
|
|||||||| |
|
|
| T |
20542282 |
ttgaaggt |
20542289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 284 - 472
Target Start/End: Original strand, 20542323 - 20542511
Alignment:
| Q |
284 |
tagaggaaagggtaggggaagaatcaacacagatcctattgagtgttataagtgtcacgagctgggacactatcagaatgaatgtcccctatggggaaaa |
383 |
Q |
| |
|
|||||||| ||| || ||||||||||||| || | ||||||||| ||||||||| |||||||||||||||||||||| ||||| ||||||| | || |
|
|
| T |
20542323 |
tagaggaaggggcagaggaagaatcaacaaagcaagtgttgagtgtttcaagtgtcacaagctgggacactatcagaatgagtgtcctctatgggaagaa |
20542422 |
T |
|
| Q |
384 |
aatgcaaattatgctcaatttgaagatggtgaattgcttctgatggctcaatcatgcatgaacacaaatgccaaagatgaggtatggtt |
472 |
Q |
| |
|
||||| || | |||| | ||||||||||||||||| ||||| ||||||||||| ||| |||||||||| |||||||||||||||||||| |
|
|
| T |
20542423 |
aatgctaactttgctgagtttgaagatggtgaattacttcttatggctcaatcttgcttgaacacaaacgccaaagatgaggtatggtt |
20542511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 46 - 128
Target Start/End: Complemental strand, 23940233 - 23940152
Alignment:
| Q |
46 |
tggttgttgagaagattctgagatctttaacaagtaagttcaattctgtggtgtgctctattgaagaatctaatgatgtgact |
128 |
Q |
| |
|
|||| |||||||||||| | ||||| ||| |||| |||||||||| ||||||||| || ||||||||||| |||||||||||| |
|
|
| T |
23940233 |
tggtggttgagaagattttaagatcatta-caagcaagttcaattgtgtggtgtgttccattgaagaatcaaatgatgtgact |
23940152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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