View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11280A_low_90 (Length: 319)
Name: NF11280A_low_90
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_90 |
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Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 7 - 304
Target Start/End: Complemental strand, 20584418 - 20584134
Alignment:
| Q |
7 |
gattggacgtttagtttgcattttgttttccttttacaattgctttcggacgtttagtttgcatttgactaatgttataactgatagcataccatttgca |
106 |
Q |
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| T |
20584418 |
gattggacgtttagtttgcattttgttttccttttacaattgctttcggacgtttagtttgcatttgactaatgttataactgatagcataccatttgca |
20584319 |
T |
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| Q |
107 |
tttttgaatcaatgactgcaaactggttttccatcatgtcattgctatgactatctgattgctttacagtctgattgctttggaatcaatgagctgtgaa |
206 |
Q |
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| T |
20584318 |
tttttgaatcaatgactgcaaactggttttccatcatgtcattgctatgactatctgattg----------------ctttggaatcaatgagctgtgaa |
20584235 |
T |
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| Q |
207 |
gggtggtaatgcctctgtgcaagatggaaaagcc---attacagtttctgcatatgaatgaaattaggttgttcaacttcaatcgtagtttttattttaa |
303 |
Q |
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| T |
20584234 |
gggtggtaatgcctctgtgcaagatggaaaagcctttattacagtttctgcatatgaatgaaattaggttgttcaacttcaatcgtagtttttattttaa |
20584135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 57 - 163
Target Start/End: Complemental strand, 20575057 - 20574950
Alignment:
| Q |
57 |
cgtttagtttgcatttgactaatgttataactgatagcataccatttgcat-ttttgaatcaatgactgcaaactggttttccatcatgtcattgctatg |
155 |
Q |
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| T |
20575057 |
cgtttagttttcatttcgctaatgctattattgattgcgtaccatttgcattttttcaatttatggctgcaaactagttttttatcatgtcattgcaaag |
20574958 |
T |
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| Q |
156 |
actatctg |
163 |
Q |
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| T |
20574957 |
actatctg |
20574950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 101 - 136
Target Start/End: Complemental strand, 20577851 - 20577816
Alignment:
| Q |
101 |
tttgcatttttgaatcaatgactgcaaactggtttt |
136 |
Q |
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| T |
20577851 |
tttgcatttttgaatcaatgactgcaaactagtttt |
20577816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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