View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11280A_low_91 (Length: 319)

Name: NF11280A_low_91
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11280A_low_91
NF11280A_low_91
[»] chr4 (5 HSPs)
chr4 (55-281)||(2648913-2649136)
chr4 (17-52)||(31843396-31843431)
chr4 (17-51)||(9627979-9628013)
chr4 (17-51)||(34552826-34552860)
chr4 (14-51)||(47692065-47692102)
[»] chr7 (3 HSPs)
chr7 (17-52)||(45490001-45490036)
chr7 (17-51)||(3357430-3357464)
chr7 (14-51)||(41902382-41902419)
[»] chr1 (3 HSPs)
chr1 (17-51)||(13077827-13077861)
chr1 (14-51)||(13253733-13253770)
chr1 (17-53)||(27090357-27090393)
[»] chr8 (1 HSPs)
chr8 (17-51)||(12638525-12638559)
[»] chr6 (3 HSPs)
chr6 (17-51)||(4173762-4173796)
chr6 (17-51)||(13041257-13041291)
chr6 (14-50)||(1449319-1449355)
[»] chr3 (3 HSPs)
chr3 (17-51)||(24119833-24119867)
chr3 (17-51)||(52174404-52174438)
chr3 (17-53)||(33069036-33069072)
[»] chr5 (1 HSPs)
chr5 (14-51)||(7035614-7035651)
[»] chr2 (2 HSPs)
chr2 (14-51)||(18075399-18075436)
chr2 (14-51)||(44092364-44092401)


Alignment Details
Target: chr4 (Bit Score: 163; Significance: 5e-87; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 55 - 281
Target Start/End: Complemental strand, 2649136 - 2648913
Alignment:
Q  55 acaatattaacaagttcatagtaatcttgttttaaaggtgtagcacaataatataggttgatacactaaatgaatcatctcaagtcagagtagtcttaaa 154  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  2649136 acaatattaacaagttcatagtaattttgttttaaaggtgtggcacaataatataggttgatacactaaatgaatcatctcaagtcagagtagtcttgaa 2649037  T
Q  155 tatcattattatcttaagacattgaacattatatatgagtcatcttacttatatgtttaacatcnnnnnnnnnnnnncatccaataagactctaccaaca 254  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||             |||||||||||||||||||||||    
T  2649036 tatcattattatcttaagacattgagcattatatatgagtcatcttacttatatgtttaacatc---ctttttttttcatccaataagactctaccaaca 2648940  T
Q  255 atgtttctaacaaattaactaataata 281  Q
    ||||||||||||||||||||| |||||    
T  2648939 atgtttctaacaaattaactactaata 2648913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 31843396 - 31843431
Alignment:
Q  17 cccctgtaggccgatctggcctattcccaaccctaa 52  Q
    ||||||||||||||||||||||||||||||||||||    
T  31843396 cccctgtaggccgatctggcctattcccaaccctaa 31843431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 9627979 - 9628013
Alignment:
Q  17 cccctgtaggccgatctggcctattcccaacccta 51  Q
    |||||||||||||| ||||||||||||||||||||    
T  9627979 cccctgtaggccgacctggcctattcccaacccta 9628013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 34552860 - 34552826
Alignment:
Q  17 cccctgtaggccgatctggcctattcccaacccta 51  Q
    |||||||||||| ||||||||||||||||||||||    
T  34552860 cccctgtaggccaatctggcctattcccaacccta 34552826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 47692065 - 47692102
Alignment:
Q  14 agacccctgtaggccgatctggcctattcccaacccta 51  Q
    ||||||||||||||||  ||||||||||||||||||||    
T  47692065 agacccctgtaggccggcctggcctattcccaacccta 47692102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 45490036 - 45490001
Alignment:
Q  17 cccctgtaggccgatctggcctattcccaaccctaa 52  Q
    ||||||||||||||||||||||||||||||||||||    
T  45490036 cccctgtaggccgatctggcctattcccaaccctaa 45490001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 3357430 - 3357464
Alignment:
Q  17 cccctgtaggccgatctggcctattcccaacccta 51  Q
    |||||||||||||| ||||||||||||||||||||    
T  3357430 cccctgtaggccgacctggcctattcccaacccta 3357464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 41902419 - 41902382
Alignment:
Q  14 agacccctgtaggccgatctggcctattcccaacccta 51  Q
    ||||||||||||||||| ||| ||||||||||||||||    
T  41902419 agacccctgtaggccgacctgacctattcccaacccta 41902382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 13077827 - 13077861
Alignment:
Q  17 cccctgtaggccgatctggcctattcccaacccta 51  Q
    |||||||||||||||||||||||||||||||||||    
T  13077827 cccctgtaggccgatctggcctattcccaacccta 13077861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 13253733 - 13253770
Alignment:
Q  14 agacccctgtaggccgatctggcctattcccaacccta 51  Q
    ||||||||||||||||| ||| ||||||||||||||||    
T  13253733 agacccctgtaggccgacctgacctattcccaacccta 13253770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 27090393 - 27090357
Alignment:
Q  17 cccctgtaggccgatctggcctattcccaaccctaaa 53  Q
    ||||||||||| | |||||||||||||||||||||||    
T  27090393 cccctgtaggctggtctggcctattcccaaccctaaa 27090357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 12638525 - 12638559
Alignment:
Q  17 cccctgtaggccgatctggcctattcccaacccta 51  Q
    |||||||||||||| ||||||||||||||||||||    
T  12638525 cccctgtaggccgacctggcctattcccaacccta 12638559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 4173796 - 4173762
Alignment:
Q  17 cccctgtaggccgatctggcctattcccaacccta 51  Q
    ||||||||||||| |||||||||||||||||||||    
T  4173796 cccctgtaggccggtctggcctattcccaacccta 4173762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 13041291 - 13041257
Alignment:
Q  17 cccctgtaggccgatctggcctattcccaacccta 51  Q
    ||||||||||||| |||||||||||||||||||||    
T  13041291 cccctgtaggccggtctggcctattcccaacccta 13041257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 50
Target Start/End: Complemental strand, 1449355 - 1449319
Alignment:
Q  14 agacccctgtaggccgatctggcctattcccaaccct 50  Q
    ||||||||||||||||  |||||||||||||||||||    
T  1449355 agacccctgtaggccggcctggcctattcccaaccct 1449319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 24119867 - 24119833
Alignment:
Q  17 cccctgtaggccgatctggcctattcccaacccta 51  Q
    |||||||||||||| ||||||||||||||||||||    
T  24119867 cccctgtaggccgacctggcctattcccaacccta 24119833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 52174438 - 52174404
Alignment:
Q  17 cccctgtaggccgatctggcctattcccaacccta 51  Q
    |||||||||||||| ||||||||||||||||||||    
T  52174438 cccctgtaggccgacctggcctattcccaacccta 52174404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 33069072 - 33069036
Alignment:
Q  17 cccctgtaggccgatctggcctattcccaaccctaaa 53  Q
    |||||||| ||||| ||||||||||||||||||||||    
T  33069072 cccctgtaagccgacctggcctattcccaaccctaaa 33069036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 7035614 - 7035651
Alignment:
Q  14 agacccctgtaggccgatctggcctattcccaacccta 51  Q
    ||||||||||||||||  ||||||||||||||||||||    
T  7035614 agacccctgtaggccggcctggcctattcccaacccta 7035651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 18075436 - 18075399
Alignment:
Q  14 agacccctgtaggccgatctggcctattcccaacccta 51  Q
    ||||||||||||||||| ||| ||||||||||||||||    
T  18075436 agacccctgtaggccgacctgacctattcccaacccta 18075399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 44092401 - 44092364
Alignment:
Q  14 agacccctgtaggccgatctggcctattcccaacccta 51  Q
    ||||||||||||| ||| ||||||||||||||||||||    
T  44092401 agacccctgtaggtcgacctggcctattcccaacccta 44092364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University