View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11280A_low_92 (Length: 319)
Name: NF11280A_low_92
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_92 |
 | |
|
| [»] scaffold0096 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 151; Significance: 7e-80; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 133 - 299
Target Start/End: Original strand, 32650608 - 32650774
Alignment:
| Q |
133 |
ggaatccaaaggaaaaagtaccagaacgtgaacaatcataatgattaactgaaatcatttcatgaggggtttgtttatatttgtgtaaatatcagaacaa |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32650608 |
ggaatccaaaggaaaaagtaccagaacgtgaacaatcataatgattaactgaaatcatttcatgaggggtttgtttatatttgtgtaaatatcagaacaa |
32650707 |
T |
|
| Q |
233 |
ttctgatccatttatcacggcgataatgcaaattaatgaaaggaaagagtaaacgaattgagatgct |
299 |
Q |
| |
|
|||||||||||| |||||||| |||||| |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
32650708 |
ttctgatccattcatcacggccataatgaaaataaatgaaaggaaagagtaaacgaattgagatgct |
32650774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0096 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: scaffold0096
Description:
Target: scaffold0096; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 8 - 137
Target Start/End: Complemental strand, 29307 - 29175
Alignment:
| Q |
8 |
aaacatagacatacaaattcaaaagacatcataccaaaaatcctgagttgacatcagattttggcaaggacttctcaaatgtgtggtaaaacttccttgg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
29307 |
aaacatagacatacaaattcaaaagacatcataccaaaaaacctgagttgacatcagattttggcaacgacttctcaaatgagtggtaaaacttccttgg |
29208 |
T |
|
| Q |
108 |
aagaaagta---aacatcaggggcgttaggaat |
137 |
Q |
| |
|
||||||||| ||||||| ||||||||||||| |
|
|
| T |
29207 |
aagaaagtaaacaacatcaagggcgttaggaat |
29175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 31 - 137
Target Start/End: Original strand, 12537298 - 12537407
Alignment:
| Q |
31 |
agacatcataccaaaaatcctgagttgacatcagattttggcaaggacttctcaaatgtgtggtaaaacttccttggaagaaagta---aacatcagggg |
127 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
12537298 |
agacatcataccaaaaaacctgagttgacatcagattttggcaactacttctcaaatgtgtggtaaaacttccttggaagaaagtaaacaacatcagggg |
12537397 |
T |
|
| Q |
128 |
cgttaggaat |
137 |
Q |
| |
|
|||||||||| |
|
|
| T |
12537398 |
cgttaggaat |
12537407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University