View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11280A_low_93 (Length: 318)
Name: NF11280A_low_93
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_93 |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 70 - 299
Target Start/End: Original strand, 5329535 - 5329763
Alignment:
| Q |
70 |
aatacataaaatgcactataatatgttaatggaatgaatttgatctattaaaacaagataattaacactaattttgtggtggcatatagaattgnnnnnn |
169 |
Q |
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| T |
5329535 |
aatacataaaatgcactataatatgttaatggaattaatttgatctattaagacaagataattaacactaattttgtggaggcatatagaattgaaaaaa |
5329634 |
T |
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| Q |
170 |
ntgagattgattgagtattggtttctgatccttttcagtctgcggcatttacaggagttcatggatatgcatttgctggagtttggttgttttttggggt |
269 |
Q |
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| T |
5329635 |
-tgagattgattgagtattggtttctgatccttttcagtctgcggcatttacaggagttcatggatatgcatttgctggagtttggttgttttttggggt |
5329733 |
T |
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| Q |
270 |
ggctttgggcattttcatgatagttaggtg |
299 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
5329734 |
ggctttgggcattttcatgatagttaggtg |
5329763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 36203297 - 36203240
Alignment:
| Q |
13 |
atgaattgtgcacataaattccatggcgtgtgtgggccacactaacctttaagttcga |
70 |
Q |
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| T |
36203297 |
atgaattgtgcacataaatttcatggcgtgtgtgggccacactaacctttaagttcga |
36203240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 68
Target Start/End: Original strand, 9851319 - 9851376
Alignment:
| Q |
11 |
tgatgaattgtgcacataaattccatggcgtgtgtgggccacactaacctttaagttc |
68 |
Q |
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| T |
9851319 |
tgatgaattgtgcacataaattccaaagcgtgtgtgggacacactaacatttaggttc |
9851376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 68
Target Start/End: Complemental strand, 52654016 - 52653959
Alignment:
| Q |
11 |
tgatgaattgtgcacataaattccatggcgtgtgtgggccacactaacctttaagttc |
68 |
Q |
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||||||| ||||||||||||||||| ||||||||||| |||||||||||||| |||| |
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| T |
52654016 |
tgatgaagtgtgcacataaattccaaagcgtgtgtgggacacactaacctttaggttc |
52653959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 33710072 - 33710021
Alignment:
| Q |
11 |
tgatgaattgtgcacataaattccatggcgtgtgtgggccacactaaccttta |
63 |
Q |
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| T |
33710072 |
tgatgaagtgtgcac-taaattccaaagcgtgtgtgggacacactaaccttta |
33710021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 12239497 - 12239556
Alignment:
| Q |
11 |
tgatgaattgtgcacataaattccatggcgtgtgtgggccacactaacctttaagttcga |
70 |
Q |
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| T |
12239497 |
tgatgaagtgtgcacataaatttcaaagcgtgtgtgggacacattaacctttaggttcga |
12239556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 70
Target Start/End: Complemental strand, 49054036 - 49053977
Alignment:
| Q |
11 |
tgatgaattgtgcacataaattccatggcgtgtgtgggccacactaacctttaagttcga |
70 |
Q |
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||||||| ||| ||||||||||||| ||||||||||| ||||||||||||| |||||| |
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| T |
49054036 |
tgatgaagtgtacacataaattccaatgcgtgtgtgggaaacactaacctttaggttcga |
49053977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 68
Target Start/End: Complemental strand, 44729320 - 44729263
Alignment:
| Q |
11 |
tgatgaattgtgcacataaattccatggcgtgtgtgggccacactaacctttaagttc |
68 |
Q |
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| T |
44729320 |
tgatgaagagtgcacataaattccaaagcgtgtgtgggatacactaacctttatgttc |
44729263 |
T |
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