View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11280A_low_96 (Length: 312)

Name: NF11280A_low_96
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11280A_low_96
NF11280A_low_96
[»] chr8 (21 HSPs)
chr8 (14-307)||(4160303-4160596)
chr8 (12-307)||(4120931-4121225)
chr8 (25-307)||(4151641-4151922)
chr8 (25-307)||(4131194-4131473)
chr8 (12-307)||(4143769-4144068)
chr8 (237-286)||(19171170-19171219)
chr8 (237-286)||(19288993-19289042)
chr8 (237-286)||(19453833-19453882)
chr8 (237-286)||(19527193-19527242)
chr8 (237-286)||(19552158-19552207)
chr8 (237-286)||(19580481-19580530)
chr8 (240-286)||(19338809-19338855)
chr8 (240-286)||(19356836-19356882)
chr8 (237-286)||(19398699-19398748)
chr8 (237-286)||(19415055-19415104)
chr8 (237-286)||(19537865-19537914)
chr8 (236-286)||(15942809-15942859)
chr8 (237-295)||(19347777-19347835)
chr8 (240-286)||(19501157-19501203)
chr8 (237-286)||(19378372-19378421)
chr8 (237-286)||(19406890-19406939)


Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 14 - 307
Target Start/End: Complemental strand, 4160596 - 4160303
Alignment:
Q  14 agaacaaaaggaaatgaaattggatgagctaccactatataattttgtaaagctcgaaaatgctacaaacagttttcacaatagtaatatgcttgggaag 113  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4160596 agaacaaaaggaaatgaaattggatgagctaccactatatgattttgtaaagctcgaaaatgctacaaacagttttcacaatagtaatatgcttgggaag 4160497  T
Q  114 ggaggttttggccctgtatacaaggtaattttgtgtaagattttctatgtcattattttttaatatatatcattaatctaatattaatatatgtttcaca 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4160496 ggaggttttggccctgtatacaaggtaattttgtgtaagattttctatgtcattattttttaatatatatcattaatctaatattaatatatgtttcaca 4160397  T
Q  214 ctatctagggaataccggaagatgggcaagaaattgctgtaaaaagactctcaaaatcatctggacaaggaatagaagaatttatgaatgaagt 307  Q
     |||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4160396 atatctagggaatactggaagatggccaagaagttgctgtaaaaagactctcaaaatcatctggacaaggaatagaagaatttatgaatgaagt 4160303  T

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Target: chr8; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 12 - 307
Target Start/End: Complemental strand, 4121225 - 4120931
Alignment:
Q  12 agagaacaaaaggaaatgaaattggatgagctaccactatataattttgtaaagctcgaaaatgctacaaacagttttcacaatagtaatatgcttggga 111  Q
    |||||||| ||  ||||||||||||||||||||||||| ||| | |||| |||||| |||| |||||||||||||||| || || ||||||||||||| |    
T  4121225 agagaacataaacaaatgaaattggatgagctaccactgtatgactttgaaaagcttgaaactgctacaaacagttttgactatggtaatatgcttggaa 4121126  T
Q  112 agggaggttttggccctgtatacaaggtaattttgtgtaagattttctatgtcattattttttaatatatatcattaatctaatattaatatatgtttca 211  Q
    | |||||||||||||||||||||||||| ||||||| | || |||| |||| |||| |||| ||||| |||||||   | |||||| || |||| |||||    
T  4121125 aaggaggttttggccctgtatacaaggtgattttgtttgaggttttatatgccatttttttctaatagatatcatatctataatatcaa-atatttttca 4121027  T
Q  212 cactatctagggaataccggaagatgggcaagaaattgctgtaaaaagactctcaaaatcatctggacaaggaatagaagaatttatgaatgaagt 307  Q
    ||||||||||||||||  ||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  4121026 cactatctagggaatattggaagatggccaagaaattgctgtgaaaagactctcaaaagcatctggacaaggaatagaagaatttatgaacgaagt 4120931  T

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Target: chr8; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 25 - 307
Target Start/End: Complemental strand, 4151922 - 4151641
Alignment:
Q  25 aaatgaaattggatgagctaccactatataattttgtaaagctcgaaaatgctacaaacagttttcacaatagtaatatgcttgggaagggaggttttgg 124  Q
    ||||||||||||||||||||||||||||| |||||| |||||| |||| ||| |||||| |||||||   || |||||||||||||||||||||||||||    
T  4151922 aaatgaaattggatgagctaccactatatgattttgaaaagcttgaaactgccacaaactgttttcattttaataatatgcttgggaagggaggttttgg 4151823  T
Q  125 ccctgtatacaaggtaattttgtgtaagattttctatgtcattattttttaatatatatcattaatctaatattaatatatgtttcacactatctaggga 224  Q
    ||| ||||||||||| ||||||| ||||||||| |||| || |||||| || |||||||||| |||  |||||||| |||  ||| ||||||||||||||    
T  4151822 cccagtatacaaggtgattttgtttaagattttgtatgaca-tattttgtattatatatcataaattcaatattaaaatactttttacactatctaggga 4151724  T
Q  225 ataccggaagatgggcaagaaattgctgtaaaaagactctcaaaatcatctggacaaggaatagaagaatttatgaatgaagt 307  Q
     |   ||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  4151723 gtcatggaagatggtcaagaaattgctgtgaaaagactctcaaaagcatctggacaaggaatagaagaattcatgaatgaagt 4151641  T

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Target: chr8; HSP #4
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 25 - 307
Target Start/End: Complemental strand, 4131473 - 4131194
Alignment:
Q  25 aaatgaaattggatgagctaccactatataattttgtaaagctcgaaaatgctacaaacagttttcacaatagtaatatgcttgggaagggaggttttgg 124  Q
    ||||||||||||||||||||||||||||| |||||| |||||| |||| ||| ||||||||||||||   || |||||||||||| ||||||||||||||    
T  4131473 aaatgaaattggatgagctaccactatatgattttgaaaagcttgaaactgccacaaacagttttcattttaataatatgcttggcaagggaggttttgg 4131374  T
Q  125 ccctgtatacaaggtaattttgtgtaagattttctatgtcattattttttaatatatatcattaatctaatattaatatatgtttcacactatctaggga 224  Q
    ||| ||||||||||| ||||||| ||||||||| |||| |||| |||| ||   |||||||| |||  |||||||| |||| ||| | ||||| ||||||    
T  4131373 cccggtatacaaggtgattttgtctaagattttgtatgacatt-ttttgta--ttatatcataaattcaatattaaaatattttttatactatataggga 4131277  T
Q  225 ataccggaagatgggcaagaaattgctgtaaaaagactctcaaaatcatctggacaaggaatagaagaatttatgaatgaagt 307  Q
     |  |||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  4131276 gtcacggaagatggtcaagaaattgctgtgaaaagactctcaaaagcatctggacaaggaatagaagaattcatgaatgaagt 4131194  T

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Target: chr8; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 12 - 307
Target Start/End: Complemental strand, 4144068 - 4143769
Alignment:
Q  12 agagaacaaaaggaaatgaaattggatgagctaccactatataattttgtaaagctcgaaaatgctacaaacagttttcacaatagtaatatgcttggga 111  Q
    |||||||||||  |||||||| | |||||||||||| | ||| | || | |||||| |||  ||| |||||||  ||||||  | | ||||| |||||||    
T  4144068 agagaacaaaaccaaatgaaaatagatgagctaccagtgtatgagttcgcaaagcttgaagctgccacaaacaactttcactttggaaatattcttggga 4143969  T
Q  112 agggaggttttggccctgtatacaaggtaattttgtgtaagattttct-------atgtcatt-attttttaatatatatcattaatctaatattaatat 203  Q
    ||||||||||||| |||||||||||||| || || | |||||||||||       |||| ||| |||   |||||||||| || |||| ||| ||    |    
T  4143968 agggaggttttggtcctgtatacaaggtgatcttatctaagattttcttatttttatgttatttattgaataatatatattataaatccaatttt----t 4143873  T
Q  204 atgtttcacactatctagggaataccggaagatgggcaagaaattgctgtaaaaagactctcaaaatcatctggacaaggaatagaagaatttatgaatg 303  Q
     | ||| |||||||| ||||||||  | ||||||| ||||||||||| || ||||||||||| || ||||| |||||||||||||||||||| ||||| |    
T  4143872 ttttttgacactatccagggaataatgcaagatggccaagaaattgccgtgaaaagactctcgaagtcatcaggacaaggaatagaagaattcatgaacg 4143773  T

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Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 286
Target Start/End: Complemental strand, 19171219 - 19171170
Alignment:
Q  237 gggcaagaaattgctgtaaaaagactctcaaaatcatctggacaaggaat 286  Q
    |||||||||||||||||||||||||| |||||  ||||||||||||||||    
T  19171219 gggcaagaaattgctgtaaaaagactttcaaagacatctggacaaggaat 19171170  T

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Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 286
Target Start/End: Original strand, 19288993 - 19289042
Alignment:
Q  237 gggcaagaaattgctgtaaaaagactctcaaaatcatctggacaaggaat 286  Q
    |||||||||||||||||||||||||| |||||| ||||| ||||||||||    
T  19288993 gggcaagaaattgctgtaaaaagactttcaaaaacatctcgacaaggaat 19289042  T

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Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 286
Target Start/End: Original strand, 19453833 - 19453882
Alignment:
Q  237 gggcaagaaattgctgtaaaaagactctcaaaatcatctggacaaggaat 286  Q
    ||||||||| |||||||||||||||| |||||| ||||||||||||||||    
T  19453833 gggcaagaagttgctgtaaaaagactttcaaaaacatctggacaaggaat 19453882  T

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Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 286
Target Start/End: Complemental strand, 19527242 - 19527193
Alignment:
Q  237 gggcaagaaattgctgtaaaaagactctcaaaatcatctggacaaggaat 286  Q
    ||||||||| |||||||||||||||| |||||| ||||||||||||||||    
T  19527242 gggcaagaagttgctgtaaaaagactttcaaaaacatctggacaaggaat 19527193  T

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Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 286
Target Start/End: Complemental strand, 19552207 - 19552158
Alignment:
Q  237 gggcaagaaattgctgtaaaaagactctcaaaatcatctggacaaggaat 286  Q
    ||||||||| |||||||||||||||| |||||| ||||||||||||||||    
T  19552207 gggcaagaagttgctgtaaaaagactttcaaaaacatctggacaaggaat 19552158  T

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Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 286
Target Start/End: Original strand, 19580481 - 19580530
Alignment:
Q  237 gggcaagaaattgctgtaaaaagactctcaaaatcatctggacaaggaat 286  Q
    ||||||||| |||||||||||||||| |||||| ||||||||||||||||    
T  19580481 gggcaagaagttgctgtaaaaagactttcaaaaacatctggacaaggaat 19580530  T

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Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 286
Target Start/End: Original strand, 19338809 - 19338855
Alignment:
Q  240 caagaaattgctgtaaaaagactctcaaaatcatctggacaaggaat 286  Q
    |||||| |||||||||||||||| |||||| ||||||||||||||||    
T  19338809 caagaagttgctgtaaaaagactttcaaaaacatctggacaaggaat 19338855  T

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Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 286
Target Start/End: Original strand, 19356836 - 19356882
Alignment:
Q  240 caagaaattgctgtaaaaagactctcaaaatcatctggacaaggaat 286  Q
    |||||| |||||||||||||||| |||||| ||||||||||||||||    
T  19356836 caagaagttgctgtaaaaagactttcaaaaacatctggacaaggaat 19356882  T

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Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 237 - 286
Target Start/End: Original strand, 19398699 - 19398748
Alignment:
Q  237 gggcaagaaattgctgtaaaaagactctcaaaatcatctggacaaggaat 286  Q
    ||||||||||||||||||||||| || || ||| ||||||||||||||||    
T  19398699 gggcaagaaattgctgtaaaaaggctttcgaaaacatctggacaaggaat 19398748  T

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Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 237 - 286
Target Start/End: Original strand, 19415055 - 19415104
Alignment:
Q  237 gggcaagaaattgctgtaaaaagactctcaaaatcatctggacaaggaat 286  Q
    ||||||||||||||||||||||| || || ||| ||||||||||||||||    
T  19415055 gggcaagaaattgctgtaaaaaggctttcgaaaacatctggacaaggaat 19415104  T

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Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 237 - 286
Target Start/End: Complemental strand, 19537914 - 19537865
Alignment:
Q  237 gggcaagaaattgctgtaaaaagactctcaaaatcatctggacaaggaat 286  Q
    ||||||||| |||||||||||||||| || ||| ||||||||||||||||    
T  19537914 gggcaagaagttgctgtaaaaagactttcgaaaacatctggacaaggaat 19537865  T

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Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 286
Target Start/End: Original strand, 15942809 - 15942859
Alignment:
Q  236 tgggcaagaaattgctgtaaaaagactctcaaaatcatctggacaaggaat 286  Q
    |||||||||| | ||||| |||||||| |||||||| ||||||||||||||    
T  15942809 tgggcaagaagtagctgtgaaaagactttcaaaatcttctggacaaggaat 15942859  T

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Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 295
Target Start/End: Original strand, 19347777 - 19347835
Alignment:
Q  237 gggcaagaaattgctgtaaaaagactctcaaaatcatctggacaaggaatagaagaatt 295  Q
    ||||||||| ||||||||||| |||| |||||| |||| ||||||||||| | ||||||    
T  19347777 gggcaagaagttgctgtaaaaggactttcaaaaacatccggacaaggaattgtagaatt 19347835  T

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Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 286
Target Start/End: Complemental strand, 19501203 - 19501157
Alignment:
Q  240 caagaaattgctgtaaaaagactctcaaaatcatctggacaaggaat 286  Q
    |||||| |||||||||||||||| |||||| |||| |||||||||||    
T  19501203 caagaagttgctgtaaaaagactttcaaaaacatccggacaaggaat 19501157  T

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Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 286
Target Start/End: Original strand, 19378372 - 19378421
Alignment:
Q  237 gggcaagaaattgctgtaaaaagactctcaaaatcatctggacaaggaat 286  Q
    ||||||||| ||||||||||||| || |||||| |||||| |||||||||    
T  19378372 gggcaagaagttgctgtaaaaaggctttcaaaaacatctgtacaaggaat 19378421  T

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Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 286
Target Start/End: Original strand, 19406890 - 19406939
Alignment:
Q  237 gggcaagaaattgctgtaaaaagactctcaaaatcatctggacaaggaat 286  Q
    ||||||||| ||||  |||||||||| |||||| ||||||||||||||||    
T  19406890 gggcaagaagttgccataaaaagactttcaaaaacatctggacaaggaat 19406939  T

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