View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11280A_low_98 (Length: 312)
Name: NF11280A_low_98
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_98 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-135; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 30049390 - 30049719
Alignment:
| Q |
1 |
atggagatgtaaaactgcagcactgcagttctgaagaacaattggcagacattttaacaaaagcacttcctagtgccaagttcatggagctaagaagcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30049390 |
atggagatgtaaaactgcagcactgcagttctgaagaacaattggcagacattttaacaaaagcacttcctagtgccaagttcatggagctaagaagcaa |
30049489 |
T |
|
| Q |
101 |
gctgggagtatttcaaaaaagttttaaggaggagtgttgactaattgacctataaaacctttctgaatactttattgtttatgttactttattgcttatg |
200 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30049490 |
gctaggagtatttcaaaaaagttttaaggaggagtgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatg |
30049589 |
T |
|
| Q |
201 |
tgtgtaattattttaacttgttttgtt-------------------agtaagattatctgcacaagttaagtaggtttatgtc----atatgacatcagc |
277 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
30049590 |
tgtgtaattattttaacttgttttgttagtaaaactatgctgcacaagtaagattatctgcacaagttaagtaggtttatgtcatatatatgacatcagc |
30049689 |
T |
|
| Q |
278 |
taagcataggctgagtcattacttagtatt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
30049690 |
taagcataggctgagtcattacttagtatt |
30049719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 7162343 - 7162671
Alignment:
| Q |
1 |
atggagatgtaaaactgcagcactgcagttctgaagaacaattggcagacattttaacaaaagcacttcctagtgccaagttcatggagctaagaagcaa |
100 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
7162343 |
atggagatgtaaaattgcagcactgcagttctgaagaacaattggcagacattttaaaaaaggcacttgctagtgccaagttcatggagctaagaagcaa |
7162442 |
T |
|
| Q |
101 |
gctgggagtatttcaaaaaagttttaaggaggagtgttgactaattgacctataaaacctttctgaatactttattgtttatgttactttattgcttatg |
200 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7162443 |
gctgggagtattccagaaaagttttaaggaggagtgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatg |
7162542 |
T |
|
| Q |
201 |
tgtgtaattattttaacttgttttgttagtaagattat-ctgcac---------------------aagttaagtaggtttatgtcatatgacatcagct |
278 |
Q |
| |
|
|||||||| |||||||||| |||||||||||| | ||| |||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
7162543 |
tgtgtaatcattttaacttattttgttagtaaaactatgctgcacaagtaataaggttatctgcacaagttaagcaggtttatgtcatatgacatcagct |
7162642 |
T |
|
| Q |
279 |
aagcataggctgagtcattacttagtatt |
307 |
Q |
| |
|
|||||||||||||||||||||| |||||| |
|
|
| T |
7162643 |
aagcataggctgagtcattactaagtatt |
7162671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 135 - 307
Target Start/End: Original strand, 30045121 - 30045316
Alignment:
| Q |
135 |
tgttgactaattgacctataaaacctttctgaatactttattgtttatgttactttattgcttatgtgtgtaattattttaacttgttttgtt------- |
227 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30045121 |
tgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatgtgtgtaattattttaacttgttttgttagtaaaa |
30045220 |
T |
|
| Q |
228 |
------------agtaagattatctgcacaagttaagtaggtttatgtc----atatgacatcagctaagcataggctgagtcattacttagtatt |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30045221 |
ctatgctgcacaagtaagattatctgcacaagttaagtaggtttatgtcatatatatgacatcagctaagcataggctgagtcattacttagtatt |
30045316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 3945644 - 3945973
Alignment:
| Q |
1 |
atggagatgtaaaactgcagcactgcagttctgaagaacaattggcagacattttaacaaaagcacttcctagtgccaagttcatggagctaagaagcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3945644 |
atggagatgtaaaactgcagcactgcagttctgaagaacaattggcagacattttaacaaaagcacttcctagtgccaagttcatggagctaagaagcaa |
3945743 |
T |
|
| Q |
101 |
gctgggagtatttcaaaaaagttttaaggaggagtgttgactaattgacctataaaacctttctgaatactttattgtttatgttactttattgcttatg |
200 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3945744 |
gctaggagtatttcaaaaaagttttaaggaggagtgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatg |
3945843 |
T |
|
| Q |
201 |
tgtgtaattattttaacttgttttgtt-------------------agtaagattatctgcacaagttaagtaggtttatgtc----atatgacatcagc |
277 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
3945844 |
tgtgtaattattttaacttgttttgttagtaaaactatgctgcacaagtaagattatctgcacaagttaagtaggtttatgtcatatatatgacatcagc |
3945943 |
T |
|
| Q |
278 |
taagcataggctgagtcattacttagtatt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
3945944 |
taagcataggctgagtcattacttagtatt |
3945973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 133 - 307
Target Start/End: Original strand, 3941377 - 3941574
Alignment:
| Q |
133 |
agtgttgactaattgacctataaaacctttctgaatactttattgtttatgttactttattgcttatgtgtgtaattattttaacttgttttgtt----- |
227 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3941377 |
agtgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatgtgtgtaattattttaacttgttttgttagtaa |
3941476 |
T |
|
| Q |
228 |
--------------agtaagattatctgcacaagttaagtaggtttatgtc----atatgacatcagctaagcataggctgagtcattacttagtatt |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3941477 |
aactatgctgcacaagtaagattatctgcacaagttaagtaggtttatgtcatatatatgacatcagctaagcataggctgagtcattacttagtatt |
3941574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 22365272 - 22365597
Alignment:
| Q |
1 |
atggagatgtaaaactgcagcactgcagttctgaagaacaattggcagacattttaacaaaagcacttcctagtgccaagttcatggagctaagaagcaa |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22365272 |
atggagatgtaaaattgcagcactgcagttctgaagaacaattggcagacattttaacaaaagcacttcctagtgccaagttcatggagctaagaagcaa |
22365371 |
T |
|
| Q |
101 |
gctgggagtatttcaaaaaagttttaaggaggagtgttgactaattgacctataaaacctttctgaatactttattgtttatgttactttattgcttatg |
200 |
Q |
| |
|
|||||||||||| || | |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22365372 |
gctgggagtattccagataagttttaaggaggagtgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatg |
22365471 |
T |
|
| Q |
201 |
tgtgtaattattttaacttgttttgtt-------------------agtaagattatctgcacaagttaagtaggtttatgtcatatgacatcagctaag |
281 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
22365472 |
tgtgtaattattttaacttgttttgttagtaaaactatgctgcataagtaaggttatctgcacaagttaagtaggtttatgtcatatgacatcaactaag |
22365571 |
T |
|
| Q |
282 |
cataggctgagtcattacttagtatt |
307 |
Q |
| |
|
||||||||||||||||||| |||||| |
|
|
| T |
22365572 |
cataggctgagtcattactaagtatt |
22365597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 135 - 307
Target Start/End: Original strand, 22361019 - 22361210
Alignment:
| Q |
135 |
tgttgactaattgacctataaaacctttctgaatactttattgtttatgttactttattgcttatgtgtgtaattattttaacttgttttgtt------- |
227 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22361019 |
tgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatgtgtgtaattattttaacttgttttgttagtaaag |
22361118 |
T |
|
| Q |
228 |
------------agtaagattatctgcacaagttaagtaggtttatgtcatatgacatcagctaagcataggctgagtcattacttagtatt |
307 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
22361119 |
ctatgctgcacaagtaaggttatctgcacaagttaagtaggtttatgtcatatgacatcagctaagcataggctgagtcattactaagtatt |
22361210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 219
Target Start/End: Complemental strand, 23397404 - 23397337
Alignment:
| Q |
154 |
aaaacctttctgaatactttattgtttatgttactttattgctta--tgtgtgtaattattttaactt |
219 |
Q |
| |
|
||||| |||||||||| || ||||| ||||||||||||||| || |||||||||| |||||||||| |
|
|
| T |
23397404 |
aaaacttttctgaatatttcgttgttaatgttactttattgcctatgtgtgtgtaatgattttaactt |
23397337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 39949786 - 39949463
Alignment:
| Q |
1 |
atggagatgtaaaactgcagcactgcagttctgaagaacaattggcagacattttaacaaaagcacttcctagtgccaagttcatggagctaagaagcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39949786 |
atggagatgtaaaactgcagcactgcagttctgaagaacaattggcagacattttaacaaaagcacttcctagtgccaagttcatggagctaagaagcaa |
39949687 |
T |
|
| Q |
101 |
gctgggagtatttcaaaaaagttttaaggaggagtgttgactaattgacctataaaacctttctgaatactttattgtttatgttactttattgcttatg |
200 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
39949686 |
gctgggagtattccagaaaagttttaaggaggagtgttgactaattgacctataaaacttttctttatactttattgtttatgttactttattgcttatg |
39949587 |
T |
|
| Q |
201 |
tgtgtaattattttaacttgttttgttagtaagattat-ctgca----------------caagttaagtaggtttatgtcatatgacatcagctaagca |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | ||| ||||| ||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
39949586 |
tgtgtaattattttaacttgttttgttagtaaaactatgctgcacaagtaaggttatctgcaagttaagtaggtttatgtcatatgacatcagctaaaca |
39949487 |
T |
|
| Q |
284 |
taggctgagtcattacttagtatt |
307 |
Q |
| |
|
|||||||||| |||||| |||||| |
|
|
| T |
39949486 |
taggctgagttattactaagtatt |
39949463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 134 - 307
Target Start/End: Complemental strand, 39954045 - 39953855
Alignment:
| Q |
134 |
gtgttgactaattgacctataaaacctttctgaatactttattgtttatgttactttattgcttatgtgtgtaattattttaacttgttttgttagtaag |
233 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39954045 |
gtgttgactaattgacctataaaacttttctttatactttattgtttatgttactttattgcttatgtgtgtaattattttaacttgttttgttagtaaa |
39953946 |
T |
|
| Q |
234 |
attat-ctgca----------------caagttaagtaggtttatgtcatatgacatcagctaagcataggctgagtcattacttagtatt |
307 |
Q |
| |
|
| ||| ||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||| |||||| |
|
|
| T |
39953945 |
actatgctgcacaagtaaggttatctgcaagttaagtaggtttatgtcatatgacatcagctaaacatagactgagttattactaagtatt |
39953855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 196625 - 196311
Alignment:
| Q |
1 |
atggagatgtaaaactgcagcactgcagttctgaagaacaattggcagacattttaacaaaagcacttcctagtgccaagttcatggagctaagaagcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
196625 |
atggagatgtaaaactgcagcactgcagttctgaagaacaattggcagacattttaacaaaagcacttcctagtgccaagttcatggagctaagaagcaa |
196526 |
T |
|
| Q |
101 |
gctgggagtatttcaaaaaagttttaaggaggagtgttgactaattgacctataaaacctttctgaatactttattgtttatgttactttattgcttatg |
200 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||| |
|
|
| T |
196525 |
gctaggagtatttcaaaaaagttttaaggaggagtgttgactaattgacctataaaacttttctgaa-----------ttatgttactttattgtttatg |
196437 |
T |
|
| Q |
201 |
tgtgtaattattttaacttgttttgtt-------------------agtaagattatctgcacaagttaagtaggtttatgtcatatgacatcagctaag |
281 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||| |||||||||| ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
196436 |
tgtgtaatcattttaacttgttttgttagtaaaactatgctgcacaagtaaggttatctgcacgagttaagtaggtttacgtcatatgacatcagctaag |
196337 |
T |
|
| Q |
282 |
cataggctgagtcattacttagtatt |
307 |
Q |
| |
|
||||||||||||||||||| |||||| |
|
|
| T |
196336 |
cataggctgagtcattactaagtatt |
196311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 133 - 307
Target Start/End: Complemental strand, 200872 - 200690
Alignment:
| Q |
133 |
agtgttgactaattgacctataaaacctttctgaatactttattgtttatgttactttattgcttatgtgtgtaattattttaacttgttttgttagtaa |
232 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
200872 |
agtgttgactaattgacctataaaacttttctgaat-----------tatgttactttattgtttatgtgtgtaatcattttaacttgttttgttagtaa |
200784 |
T |
|
| Q |
233 |
ga-------------------ttatctgcacaagttaagtaggtttatgtcatatgacatcagctaagcataggctgagtcattacttagtatt |
307 |
Q |
| |
|
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
200783 |
aactatgctgcacaagtaaggttatctgcacaagttaagtaggtttacctcatatgacatcagctaagcataggctgagtcattactaagtatt |
200690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 135 - 307
Target Start/End: Original strand, 1330569 - 1330760
Alignment:
| Q |
135 |
tgttgactaattgacctataaaacctttctgaatactttattgtttatgttactttattgcttatgtgtgtaattattttaacttgttttgttagtaaga |
234 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| | |
|
|
| T |
1330569 |
tgttgactaattgacctataaaacttgtctgaatactttattgtttatgttactctattgcttatgtgtgtaatcattttaacttgttttgttagtaaaa |
1330668 |
T |
|
| Q |
235 |
-------------------ttatctgcacaagttaagtaggtttatgtcatatgacatcagctaagcataggctgagtcattacttagtatt |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||| | |||||| |
|
|
| T |
1330669 |
ctatactgcacaagtaatgttatctgcacaagttaagtaggtttatgtcatatgacatcagcaaagtataggttgagtcattagtaagtatt |
1330760 |
T |
|
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