View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11280_low_1 (Length: 438)
Name: NF11280_low_1
Description: NF11280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 402; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 11 - 424
Target Start/End: Complemental strand, 30258001 - 30257588
Alignment:
| Q |
11 |
cagagagcagatgtgaaagattgctgtcaatttgaggtggcccagagttcatgttaggatcctcttgcaaaattttagtaacttgaaaaatggaagtgta |
110 |
Q |
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| T |
30258001 |
cagagagcagatgtgaaagattgctgtcaatttgaggtggcccagagttcatgttaggatcctcttgcaaaattttagtaacttgaaaaatggaagtgta |
30257902 |
T |
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| Q |
111 |
aaactttggattaagtttatccggagacttgtaccggtatcgtctatgtggaggagtattgttttcggtccattcaattgtccatccaagataaacaaga |
210 |
Q |
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| T |
30257901 |
aaactttggattaagtttatccggagacttgtaccggtatcgtctatgtggaggagtattgttttcggtccattcaattgtccatccaagataaacaaga |
30257802 |
T |
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| Q |
211 |
tgttttcttactttcgtcttcaaaagctcccgaaccgtcttgctcctacatccaagtgcatactcatcaataacttcaggacagaatccaacttcagaca |
310 |
Q |
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| T |
30257801 |
tgttttcttactttcgtcttcaaaagctcccgaaccgtcttgctcctacatccaagtgcatactcatcaataacttcaggacagaattcaacttcagaca |
30257702 |
T |
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| Q |
311 |
gttccaatggcttccaaattatggacttagaacgtctccgtttttgatttttatctgattcaagctcttcatgtaaaataatgtccttctcaaattccac |
410 |
Q |
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| T |
30257701 |
gttccaatggcttccaaattatggacttagaacgtctccgttttcgatttttatctgattcaagctcttcatgtaaaagaatgtccttctcaaattccac |
30257602 |
T |
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| Q |
411 |
atccaccatttgat |
424 |
Q |
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| T |
30257601 |
atccaccatttgat |
30257588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 353 - 423
Target Start/End: Complemental strand, 30257593 - 30257523
Alignment:
| Q |
353 |
tttgatttttatctgattcaagctcttcatgtaaaataatgtccttctcaaattccacatccaccatttga |
423 |
Q |
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| T |
30257593 |
tttgatttttatctgattcaagctcttcatgtaaaagaatttccttctcaaactccacatccaccatttga |
30257523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 353 - 418
Target Start/End: Complemental strand, 30257527 - 30257462
Alignment:
| Q |
353 |
tttgatttttatctgattcaagctcttcatgtaaaataatgtccttctcaaattccacatccacca |
418 |
Q |
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| T |
30257527 |
tttgacttttatctgattcaagctcttcatgtaaaagattttccttctcaaattcctcatccacca |
30257462 |
T |
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