View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11280_low_2 (Length: 399)
Name: NF11280_low_2
Description: NF11280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 355; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 6 - 384
Target Start/End: Complemental strand, 14457501 - 14457123
Alignment:
| Q |
6 |
tgcaatgatctgagacgttttaactttcccaaagaaactggaattgtcccaaatagattattgttcccaaggtctagtacgtccaggaaagagcaatttg |
105 |
Q |
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| T |
14457501 |
tgcaatgatctgagacgttttaactttcccaaagaaactggaattgtcccaaatagattattgttcccaaggtctagtacatctaggaaagagcaatttg |
14457402 |
T |
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| Q |
106 |
caaggttgggagggatccttccagttaggttgtttcccgaaagatcaatgacagtaacatatgacatttctcctaaagacaatggtatttctccatgaag |
205 |
Q |
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| T |
14457401 |
caaggttgggagagatccttccagttagattgtttcccgaaagatcaatgacagtaacatatgacatttctcctaaagacaatggtatttctccgtgaag |
14457302 |
T |
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| Q |
206 |
tagattatgagacagagataaaaattgcccagaactcatgtgttgactaatattccacgggattgcaccagaaaagtgattgtgcgagagatctagcatc |
305 |
Q |
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| T |
14457301 |
ttgattatgagacagagataaaaattgcccagaactcatgtgttgactaatattccacgggattgcaccagaaaagtgattgtgcgagagatctagcatc |
14457202 |
T |
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| Q |
306 |
tggaatccagatgttataacaggaagcggtccgtcaaaaagattaaagcttagatcaatcataacaggagccctcaatg |
384 |
Q |
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| T |
14457201 |
tggaatccagatgttataacaggaagcggtccgtcaaaaagattaaagcttagatcaatcataacaggagccctcaatg |
14457123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 33 - 363
Target Start/End: Original strand, 14493876 - 14494206
Alignment:
| Q |
33 |
cccaaagaaactggaattgtcccaaatagattattgttcccaaggtctagtacgtccaggaaagagcaatttgcaaggttgggagggatccttccagtta |
132 |
Q |
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| T |
14493876 |
cccaaagaacctggaatggtcccaaatagactattattcccaaggtctagtacatcgagtaaagagcaatttgcaaggcttggagggatccttccagtta |
14493975 |
T |
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| Q |
133 |
ggttgtttcccgaaagatcaatgacagtaacatatgacatttctcctaaagacaatggtatttctccatgaagtagattatgagacagagataaaaattg |
232 |
Q |
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| T |
14493976 |
agttgtttcctgaaagatcaatggcaataacagaggacatttctcctaaagacactggtatttctccattgagttgattatatgaaagagataaaaatct |
14494075 |
T |
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| Q |
233 |
cccagaactcatgtgttgactaatattccacgggattgcaccagaaaagtgattgtgcgagagatctagcatctggaatccagatgttataacaggaagc |
332 |
Q |
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| T |
14494076 |
cactccattcatgcgttgactaatgttcactgggatcgcacctgaaaagcaattgtgtgagagatctagcgactcaaatccttgtgtcatagtagggaga |
14494175 |
T |
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| Q |
333 |
ggtccgtcaaaaagattaaagcttagatcaa |
363 |
Q |
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| T |
14494176 |
ggtccgtgaaaaagattaaagcttagatcaa |
14494206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 22 - 363
Target Start/End: Original strand, 14469447 - 14469788
Alignment:
| Q |
22 |
gttttaactttcccaaagaaactggaattgtcccaaatagattattgttcccaaggtctagtacgtccaggaaagagcaatttgcaaggttgggagggat |
121 |
Q |
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| T |
14469447 |
gttttaactcacccaaggaatctggaattgtcccaaacagactattattcccaaggtccagtacatccagtaaatggcaatttgcaaagctggcagggat |
14469546 |
T |
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| Q |
122 |
ccttccagttaggttgtttcccgaaagatcaatgacagtaacatatgacatttctcctaaagacaatggtatttctccatgaagtagattatgagacaga |
221 |
Q |
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| T |
14469547 |
ccttccggttaagtagttgcctgaaagatttatcacagtacaaggtgacatttctcctagagacaatggtatttctccatggagttgattatgagaaaga |
14469646 |
T |
|
| Q |
222 |
gataaaaattgcccagaactcatgtgttgactaatattccacgggattgcaccagaaaagtgattgtgcgagagatctagcatctggaatccagatgtta |
321 |
Q |
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| T |
14469647 |
gataaaattcccacatgattcatgtattgacatatgtttaatgggattgtaccagaaaagcgattgtgtgagagatctagcagcgcgactccaggtttta |
14469746 |
T |
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| Q |
322 |
taacaggaagcggtccgtcaaaaagattaaagcttagatcaa |
363 |
Q |
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| T |
14469747 |
taacaggaattggtccatcaagaagattaaagcttagatcaa |
14469788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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