View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11281_high_1 (Length: 345)

Name: NF11281_high_1
Description: NF11281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11281_high_1
NF11281_high_1
[»] chr3 (10 HSPs)
chr3 (19-306)||(23168266-23168554)
chr3 (239-335)||(51118481-51118578)
chr3 (250-306)||(25530743-25530799)
chr3 (236-306)||(5270804-5270874)
chr3 (237-286)||(19912629-19912678)
chr3 (236-288)||(16242192-16242244)
chr3 (236-280)||(19533827-19533871)
chr3 (249-335)||(20290436-20290521)
chr3 (247-328)||(3462074-3462153)
chr3 (238-286)||(12517339-12517387)
[»] chr7 (9 HSPs)
chr7 (237-335)||(17887729-17887826)
chr7 (248-335)||(2505844-2505930)
chr7 (238-286)||(4450720-4450768)
chr7 (281-335)||(21228461-21228514)
chr7 (281-335)||(21229096-21229149)
chr7 (238-290)||(19201322-19201374)
chr7 (251-306)||(2455371-2455426)
chr7 (235-286)||(3173759-3173810)
chr7 (254-322)||(19397943-19398010)
[»] chr5 (4 HSPs)
chr5 (238-335)||(29989002-29989098)
chr5 (237-335)||(28280283-28280381)
chr5 (269-335)||(23032666-23032731)
chr5 (238-335)||(32415830-32415926)
[»] chr4 (7 HSPs)
chr4 (238-335)||(17661955-17662052)
chr4 (238-304)||(19335225-19335291)
chr4 (238-331)||(4611510-4611603)
chr4 (238-296)||(19666949-19667007)
chr4 (238-288)||(25025153-25025203)
chr4 (278-335)||(9739960-9740016)
chr4 (238-335)||(19538883-19538980)
[»] chr2 (3 HSPs)
chr2 (237-335)||(42153635-42153732)
chr2 (236-334)||(16042661-16042758)
chr2 (268-335)||(25938533-25938599)
[»] scaffold0059 (1 HSPs)
scaffold0059 (237-329)||(63947-64038)
[»] chr1 (8 HSPs)
chr1 (248-332)||(21536916-21536999)
chr1 (238-288)||(11845221-11845271)
chr1 (238-335)||(27912064-27912161)
chr1 (236-286)||(21663088-21663138)
chr1 (248-297)||(17016824-17016873)
chr1 (248-288)||(14235294-14235334)
chr1 (238-286)||(26647357-26647405)
chr1 (267-334)||(31260654-31260721)
[»] scaffold0002 (1 HSPs)
scaffold0002 (240-304)||(369252-369316)
[»] chr8 (2 HSPs)
chr8 (238-280)||(18570547-18570589)
chr8 (238-303)||(18836824-18836889)
[»] chr6 (2 HSPs)
chr6 (238-288)||(1636680-1636730)
chr6 (238-286)||(22845851-22845899)


Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 19 - 306
Target Start/End: Original strand, 23168266 - 23168554
Alignment:
Q  19 tcatgcatcaatttattaaaaag-tggtggatatcgaatgtgaaggtcatcgttgattttgtgttatttcaagcctgcttggttagtcttttgaggctca 117  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||    
T  23168266 tcatgcatcaatttattaaaaaggtggtggatatcgaatgtgaaggtcattgttgattttgtgttatttcaagcctggatggttagtcttttgaggctca 23168365  T
Q  118 tcgcattatgtgtattgatcttatacgagagctaaccagtaaccatgacctctatatctagatgtttgggataaagaatcaattcaacaaggtcaaacac 217  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||    
T  23168366 tcgcattatgtgtattgatcttatacgagagctaaccagtaatcatgacctctatatctagatgtctaggacaaagaatcaattcaacaaggtcaaacac 23168465  T
Q  218 acatcaggagagtttgccattgatgacagatcatcttacgttactcttcgcatattttccagtcatttttatttagttttgatccaaaa 306  Q
    |||||   |||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  23168466 acatccaaagagttggtcattgatgacagatcatcttacgttactcttcgcatatttttcagtcatttttatttagttttgatccaaaa 23168554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 239 - 335
Target Start/End: Original strand, 51118481 - 51118578
Alignment:
Q  239 gatgacagatcatcttacgttactcttcgcatattttc-cagtcatttttatttagttttgatccaaaaataaaggagttttagagcaattgcctatg 335  Q
    |||||||  ||||||||||||| | || |||||||||  |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  51118481 gatgacatgtcatcttacgttatttttagcatattttttcagtcatttttatttagttttgatccaaaattaaaggagttttagaacaattgcctatg 51118578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 250 - 306
Target Start/End: Original strand, 25530743 - 25530799
Alignment:
Q  250 atcttacgttactcttcgcatattttccagtcatttttatttagttttgatccaaaa 306  Q
    ||||||||||| |||| ||||||||| ||||||||||||||||||||| ||||||||    
T  25530743 atcttacgttattcttagcatatttttcagtcatttttatttagttttaatccaaaa 25530799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 306
Target Start/End: Original strand, 5270804 - 5270874
Alignment:
Q  236 attgatgacagatcatcttacgttactcttcgcatattttccagtcatttttatttagttttgatccaaaa 306  Q
    |||||||||| | |||||||| ||| |||| | || |||| ||||||||||||||||||||| ||||||||    
T  5270804 attgatgacaaaccatcttacattattcttaggatgtttttcagtcatttttatttagttttaatccaaaa 5270874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 237 - 286
Target Start/End: Complemental strand, 19912678 - 19912629
Alignment:
Q  237 ttgatgacagatcatcttacgttactcttcgcatattttccagtcatttt 286  Q
    |||||||||| ||||||||||||| |||| ||||||||| ||||||||||    
T  19912678 ttgatgacaggtcatcttacgttattcttagcatatttttcagtcatttt 19912629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 288
Target Start/End: Original strand, 16242192 - 16242244
Alignment:
Q  236 attgatgacagatcatcttacgttactcttcgcatattttccagtcattttta 288  Q
    ||||||||||| ||||||||||||| |||| ||||||||| || |||||||||    
T  16242192 attgatgacaggtcatcttacgttattcttagcatatttttcactcattttta 16242244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 280
Target Start/End: Complemental strand, 19533871 - 19533827
Alignment:
Q  236 attgatgacagatcatcttacgttactcttcgcatattttccagt 280  Q
    ||||||||||||||||||||||||| |||| ||||||||| ||||    
T  19533871 attgatgacagatcatcttacgttattcttagcatatttttcagt 19533827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 335
Target Start/End: Original strand, 20290436 - 20290521
Alignment:
Q  249 catcttacgttactcttcgcatattttccagtcatttttatttagttttgatccaaaaataaaggagttttagagcaattgcctatg 335  Q
    |||||||| ||| |||  ||||||||||||| | ||||||||||| |||||||||| | | || |||||||||| ||| ||||||||    
T  20290436 catcttacattattctaagcatattttccagccctttttatttaggtttgatccaagattgaa-gagttttagaacaactgcctatg 20290521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 328
Target Start/End: Original strand, 3462074 - 3462153
Alignment:
Q  247 atcatcttacgttactcttcgcatattttccagtcatttttatttagttttgatccaaaaataaaggagttttagagcaatt 328  Q
    |||||||||||||| | || |||||||||| |||||||||||||||||||   | ||| | ||||||| |||||||||||||    
T  3462074 atcatcttacgttatttttagcatattttc-agtcatttttatttagtttaatttcaaga-taaaggaattttagagcaatt 3462153  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 286
Target Start/End: Complemental strand, 12517387 - 12517339
Alignment:
Q  238 tgatgacagatcatcttacgttactcttcgcatattttccagtcatttt 286  Q
    ||||||||| ||||||||||||| |||| |||| |||| ||||||||||    
T  12517387 tgatgacaggtcatcttacgttattcttagcatctttttcagtcatttt 12517339  T

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Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 237 - 335
Target Start/End: Original strand, 17887729 - 17887826
Alignment:
Q  237 ttgatgacagatcatcttacgttactcttcgcatattttccagtcatttttatttagttttgatccaaaaataaaggagttttagagcaattgcctatg 335  Q
    |||||||||| ||||| ||||||| |||| ||||||||| |||||||||||| ||||||||||||| || ||| ||||||||||||| |||||||||||    
T  17887729 ttgatgacaggtcatcctacgttattcttagcatatttttcagtcatttttagttagttttgatcc-aagatagaggagttttagagaaattgcctatg 17887826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 248 - 335
Target Start/End: Complemental strand, 2505930 - 2505844
Alignment:
Q  248 tcatcttacgttactcttcgcatattttccagtcatttttatttagttttgatccaaaaataaaggagttttagagcaattgcctatg 335  Q
    ||||||||||||| |||| ||||||||| |||||||||||||||||||| ||||| |||||| |||||||||||| |||||| |||||    
T  2505930 tcatcttacgttattcttagcatatttttcagtcatttttatttagtttcgatcc-aaaatagaggagttttagaacaattgtctatg 2505844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 238 - 286
Target Start/End: Complemental strand, 4450768 - 4450720
Alignment:
Q  238 tgatgacagatcatcttacgttactcttcgcatattttccagtcatttt 286  Q
    ||||||||||||||||||||||| |||| |||| |||||||||||||||    
T  4450768 tgatgacagatcatcttacgttattcttagcatgttttccagtcatttt 4450720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 281 - 335
Target Start/End: Complemental strand, 21228514 - 21228461
Alignment:
Q  281 catttttatttagttttgatccaaaaataaaggagttttagagcaattgcctatg 335  Q
    ||||||||||||||||||||||||   || |||||||||||||||||||||||||    
T  21228514 catttttatttagttttgatccaagt-tacaggagttttagagcaattgcctatg 21228461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 281 - 335
Target Start/End: Complemental strand, 21229149 - 21229096
Alignment:
Q  281 catttttatttagttttgatccaaaaataaaggagttttagagcaattgcctatg 335  Q
    ||||||||||||||||||||||||   || |||||||||||||||||||||||||    
T  21229149 catttttatttagttttgatccaagt-tacaggagttttagagcaattgcctatg 21229096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 290
Target Start/End: Original strand, 19201322 - 19201374
Alignment:
Q  238 tgatgacagatcatcttacgttactcttcgcatattttccagtcatttttatt 290  Q
    ||||||||||||||||||||||| |||| |||| |||| |||| |||||||||    
T  19201322 tgatgacagatcatcttacgttattcttagcatgtttttcagtaatttttatt 19201374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 251 - 306
Target Start/End: Complemental strand, 2455426 - 2455371
Alignment:
Q  251 tcttacgttactcttcgcatattttccagtcatttttatttagttttgatccaaaa 306  Q
    ||||||||||||||| |||| |||| ||  ||||||||||||||||| ||||||||    
T  2455426 tcttacgttactcttagcatttttttcaaacatttttatttagttttaatccaaaa 2455371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 235 - 286
Target Start/End: Complemental strand, 3173810 - 3173759
Alignment:
Q  235 cattgatgacagatcatcttacgttactcttcgcatattttccagtcatttt 286  Q
    |||||||||||||||||||| ||||| |||| |||| |||| ||||||||||    
T  3173810 cattgatgacagatcatcttgcgttattcttagcatgtttttcagtcatttt 3173759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 322
Target Start/End: Original strand, 19397943 - 19398010
Alignment:
Q  254 tacgttactcttcgcatattttccagtcatttttatttagttttgatccaaaaataaaggagttttaga 322  Q
    ||||||| | ||| || ||||| |||||||||||||||| ||||||||| ||| || ||||||||||||    
T  19397943 tacgttatttttcacaaatttttcagtcatttttatttaattttgatcc-aaattagaggagttttaga 19398010  T

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Target: chr5 (Bit Score: 54; Significance: 6e-22; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 238 - 335
Target Start/End: Original strand, 29989002 - 29989098
Alignment:
Q  238 tgatgacagatcatcttacgttactcttcgcatattttccagtcatttttatttagttttgatccaaaaataaaggagttttagagcaattgcctatg 335  Q
    |||||||||| |||||||||||| |||| ||||||||| |||| |||||||||||||||||||||  ||||| |||||||||||||| ||| ||||||    
T  29989002 tgatgacagaccatcttacgttattcttagcatatttttcagtaatttttatttagttttgatcc-gaaatagaggagttttagagctattacctatg 29989098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 237 - 335
Target Start/End: Complemental strand, 28280381 - 28280283
Alignment:
Q  237 ttgatgacagatcatcttacgttactcttcgcatattttcc-agtcatttttatttagttttgatccaaaaataaaggagttttagagcaattgcctatg 335  Q
    |||||||||  ||||||||||||| | || |||||||||   |||||||||||||||||||| |||| |||||| |||||| ||||| |||||| |||||    
T  28280381 ttgatgacatgtcatcttacgttatttttagcatatttttttagtcatttttatttagttttaatcc-aaaatagaggagtattagaacaattgtctatg 28280283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 269 - 335
Target Start/End: Complemental strand, 23032731 - 23032666
Alignment:
Q  269 atattttccagtcatttttatttagttttgatccaaaaataaaggagttttagagcaattgcctatg 335  Q
    ||||||| || ||||||||||||||||||||| | ||| || ||||||||||||||||||| |||||    
T  23032731 atatttttcaatcatttttatttagttttgat-ctaaactagaggagttttagagcaattgactatg 23032666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 335
Target Start/End: Original strand, 32415830 - 32415926
Alignment:
Q  238 tgatgacagatcatcttacgttactcttcgcatattttccagtcatttttatttagttttgatccaaaaataaaggagttttagagcaattgcctatg 335  Q
    ||||||||  ||||||||| ||| |||| ||||||||| |||| ||||||||| || ||| ||||||   || |||||||||||| ||||| ||||||    
T  32415830 tgatgacatgtcatcttacattattcttagcatatttttcagtaatttttattcagcttttatccaagt-tacaggagttttagaacaatttcctatg 32415926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 9e-18; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 238 - 335
Target Start/End: Complemental strand, 17662052 - 17661955
Alignment:
Q  238 tgatgacagatcatcttacgttactcttcgcatattttccagtcat-ttttatttagttttgatccaaaaataaaggagttttagagcaattgcctatg 335  Q
    |||||||||||||||||| |||| |||  ||||||||| ||||||| |||||||||||||| |||| ||||||||||||| ||||| |||| |||||||    
T  17662052 tgatgacagatcatcttatgttattctaagcatatttttcagtcattttttatttagttttaatcc-aaaataaaggagtattagaacaatcgcctatg 17661955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 238 - 304
Target Start/End: Original strand, 19335225 - 19335291
Alignment:
Q  238 tgatgacagatcatcttacgttactcttcgcatattttccagtcatttttatttagttttgatccaa 304  Q
    ||||||||||||||||||||||| |||| |||||||||  ||||||||||| || ||||||||||||    
T  19335225 tgatgacagatcatcttacgttattcttagcatattttttagtcatttttagttcgttttgatccaa 19335291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 331
Target Start/End: Original strand, 4611510 - 4611603
Alignment:
Q  238 tgatgacagatcatcttacgttactcttcgcatattttccagtcatttttattta-gttttgatccaaaaataaaggagttttagagcaattgcc 331  Q
    ||||||||| ||||||||||||| | |   |||||||| |||||||||||| ||| |||||||| |||| ||| |||||||||||| ||||||||    
T  4611510 tgatgacaggtcatcttacgttattttcaacatatttttcagtcatttttagttatgttttgat-caaacatagaggagttttagaacaattgcc 4611603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 19666949 - 19667007
Alignment:
Q  238 tgatgacagatcatcttacgttactcttcgcatattttccagtcatttttatttagttt 296  Q
    ||||||| ||||||||||||||| |||| ||||||||| |||||| ||||| |||||||    
T  19666949 tgatgaccgatcatcttacgttattcttagcatatttttcagtcacttttagttagttt 19667007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 288
Target Start/End: Complemental strand, 25025203 - 25025153
Alignment:
Q  238 tgatgacagatcatcttacgttactcttcgcatattttccagtcattttta 288  Q
    ||||||||| ||||||||||||| |||| |||| |||| ||||||||||||    
T  25025203 tgatgacaggtcatcttacgttattcttagcatgtttttcagtcattttta 25025153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 335
Target Start/End: Original strand, 9739960 - 9740016
Alignment:
Q  278 agtcatttttatttagttttgatccaaaaataaaggagttttagagcaattgcctatg 335  Q
    ||||||||||||||||||||||| | ||| || |||||||||||| ||||||| ||||    
T  9739960 agtcatttttatttagttttgat-ctaaattagaggagttttagaacaattgcatatg 9740016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 335
Target Start/End: Original strand, 19538883 - 19538980
Alignment:
Q  238 tgatgacagatcatcttacgttactcttcgcatattttccagtcatttttatttagttttgatccaaaaataaaggagttttagagcaattgcctatg 335  Q
    ||||||| ||||||||||||||| |||| | |||||||  ||||| ||||| |||||||  |  | | |||| |||||| ||||| ||||||||||||    
T  19538883 tgatgaccgatcatcttacgttattcttagtatattttttagtcacttttagttagtttaaaatcgagaatagaggagtattagaacaattgcctatg 19538980  T

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Target: chr2 (Bit Score: 47; Significance: 9e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 237 - 335
Target Start/End: Complemental strand, 42153732 - 42153635
Alignment:
Q  237 ttgatgacagatcatcttacgttactcttcgcatattttccagtcatttttatttagttttgatccaaaaataaaggagttttagagcaattgcctatg 335  Q
    |||||||||||||||||| ||||| | ||  |||||||| |||||||||||||||||||||| ||| ||| || | |||||||||| ||||||||||||    
T  42153732 ttgatgacagatcatcttccgttatttttaacatatttttcagtcatttttatttagttttgttcc-aaattatatgagttttagaacaattgcctatg 42153635  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 334
Target Start/End: Original strand, 16042661 - 16042758
Alignment:
Q  236 attgatgacagatcatcttacgttactcttcgcatattttccagtcatttttatttagttttgatccaaaaataaaggagttttagagcaattgcctat 334  Q
    ||||||||||   |||||||||||| ||||  ||||| || || ||||||||||||| ||||||||| |||||| || || |||||||||||| |||||    
T  16042661 attgatgacaagccatcttacgttattcttaacatatgtttcaatcatttttatttaattttgatcc-aaaatagagaagctttagagcaattacctat 16042758  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 268 - 335
Target Start/End: Complemental strand, 25938599 - 25938533
Alignment:
Q  268 catattttccagtcatttttatttagttttgatccaaaaataaaggagttttagagcaattgcctatg 335  Q
    |||||||| ||||| ||||||||||||||| |||| |||||| |  ||| ||||||||||||||||||    
T  25938599 catatttttcagtcttttttatttagttttaatcc-aaaatagaatagtattagagcaattgcctatg 25938533  T

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Target: scaffold0059 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 237 - 329
Target Start/End: Original strand, 63947 - 64038
Alignment:
Q  237 ttgatgacagatcatcttacgttactcttcgcatattttccagtcatttttatttagttttgatccaaaaataaaggagttttagagcaattg 329  Q
    ||||||| ||||||| ||||| || | || ||||||||| |||||||||||||||||||||||||| ||| || |||||||||||| ||||||    
T  63947 ttgatgagagatcattttacgctatttttagcatatttttcagtcatttttatttagttttgatcc-aaattagaggagttttagaacaattg 64038  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 248 - 332
Target Start/End: Original strand, 21536916 - 21536999
Alignment:
Q  248 tcatcttacgttactcttcgcatattttccagtcatttttatttagttttgatccaaaaataaaggagttttagagcaattgcct 332  Q
    ||||||||||||| | || ||||||||| |||||||||||| ||||||||||||| ||| || |||||||||| | |||||||||    
T  21536916 tcatcttacgttatttttagcatatttttcagtcatttttagttagttttgatcc-aaattataggagttttaaaacaattgcct 21536999  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 288
Target Start/End: Original strand, 11845221 - 11845271
Alignment:
Q  238 tgatgacagatcatcttacgttactcttcgcatattttccagtcattttta 288  Q
    ||||||||||||||||||||||| |||| ||||||||| |||| |||||||    
T  11845221 tgatgacagatcatcttacgttattcttagcatatttttcagttattttta 11845271  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 335
Target Start/End: Complemental strand, 27912161 - 27912064
Alignment:
Q  238 tgatgacagatcatcttacgttactcttcgcatattttccagtcat-ttttatttagttttgatccaaaaataaaggagttttagagcaattgcctatg 335  Q
    ||||||||  ||||||||||||| ||||  ||| |||| ||||||| |||||||||||||| |||| |||||| |||||| ||||| |||||| |||||    
T  27912161 tgatgacatgtcatcttacgttattcttaacatgtttttcagtcattttttatttagttttaatcc-aaaatagaggagtattagaacaattgtctatg 27912064  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 286
Target Start/End: Original strand, 21663088 - 21663138
Alignment:
Q  236 attgatgacagatcatcttacgttactcttcgcatattttccagtcatttt 286  Q
    ||||||||||| ||||||||||||| |||| |||| |||| ||||||||||    
T  21663088 attgatgacaggtcatcttacgttattcttagcatgtttttcagtcatttt 21663138  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 297
Target Start/End: Original strand, 17016824 - 17016873
Alignment:
Q  248 tcatcttacgttactcttcgcatattttccagtcatttttatttagtttt 297  Q
    |||||| |||||| |||| ||||||||| |||| ||||||||||||||||    
T  17016824 tcatctcacgttattcttagcatatttttcagttatttttatttagtttt 17016873  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 288
Target Start/End: Original strand, 14235294 - 14235334
Alignment:
Q  248 tcatcttacgttactcttcgcatattttccagtcattttta 288  Q
    |||||||||||||||||| |||| |||| ||||||||||||    
T  14235294 tcatcttacgttactcttagcatgtttttcagtcattttta 14235334  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 286
Target Start/End: Original strand, 26647357 - 26647405
Alignment:
Q  238 tgatgacagatcatcttacgttactcttcgcatattttccagtcatttt 286  Q
    ||||||||| ||||||||||||| |||| ||||||||| ||||| ||||    
T  26647357 tgatgacaggtcatcttacgttattcttagcatatttttcagtcttttt 26647405  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 334
Target Start/End: Original strand, 31260654 - 31260721
Alignment:
Q  267 gcatattttccagtcatttttatttag-ttttgatccaaaaataaaggagttttagagcaattgcctat 334  Q
    ||||||||| ||  ||||||||||||  ||||||||||| | || ||||||||||||||||||||||||    
T  31260654 gcatatttttcaaacatttttatttaaattttgatccaaga-tagaggagttttagagcaattgcctat 31260721  T

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Target: scaffold0002 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 304
Target Start/End: Original strand, 369252 - 369316
Alignment:
Q  240 atgacagatcatcttacgttactcttcgcatattttccagtcatttttatttagttttgatccaa 304  Q
    |||||| | |||||||| ||| | || |||| |||| ||||||||||||||||||||||||||||    
T  369252 atgacataccatcttacattatttttagcatgtttttcagtcatttttatttagttttgatccaa 369316  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 280
Target Start/End: Complemental strand, 18570589 - 18570547
Alignment:
Q  238 tgatgacagatcatcttacgttactcttcgcatattttccagt 280  Q
    ||||||||||||||||||||||| |||| ||||||||| ||||    
T  18570589 tgatgacagatcatcttacgttattcttagcatatttttcagt 18570547  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 303
Target Start/End: Complemental strand, 18836889 - 18836824
Alignment:
Q  238 tgatgacagatcatcttacgttactcttcgcatattttccagtcatttttatttagttttgatcca 303  Q
    ||||||||||||||||||| ||| |||| |||| |||| || ||||||| | |||||||| |||||    
T  18836889 tgatgacagatcatcttacattattcttagcatgtttttcaatcattttaagttagttttcatcca 18836824  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 288
Target Start/End: Complemental strand, 1636730 - 1636680
Alignment:
Q  238 tgatgacagatcatcttacgttactcttcgcatattttccagtcattttta 288  Q
    ||||||||||||||||||||||| |||| |||| |||| |||| |||||||    
T  1636730 tgatgacagatcatcttacgttattcttagcatgtttttcagttattttta 1636680  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 286
Target Start/End: Original strand, 22845851 - 22845899
Alignment:
Q  238 tgatgacagatcatcttacgttactcttcgcatattttccagtcatttt 286  Q
    |||||||||| ||||||||||||||||| |||| |||| |||| |||||    
T  22845851 tgatgacagaccatcttacgttactcttagcatgtttttcagttatttt 22845899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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