View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11281_high_3 (Length: 244)

Name: NF11281_high_3
Description: NF11281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11281_high_3
NF11281_high_3
[»] chr5 (9 HSPs)
chr5 (89-234)||(3647590-3647736)
chr5 (1-85)||(10591910-10591994)
chr5 (7-85)||(2798395-2798472)
chr5 (7-85)||(30785066-30785144)
chr5 (1-85)||(31113317-31113401)
chr5 (10-77)||(22188079-22188146)
chr5 (10-77)||(28023526-28023593)
chr5 (7-85)||(2804562-2804639)
chr5 (7-78)||(12682625-12682696)
[»] chr8 (14 HSPs)
chr8 (1-85)||(2743916-2744000)
chr8 (7-85)||(4125104-4125182)
chr8 (7-85)||(30935987-30936065)
chr8 (9-77)||(13468827-13468895)
chr8 (7-77)||(19715806-19715876)
chr8 (7-78)||(30056081-30056152)
chr8 (7-77)||(12958165-12958235)
chr8 (7-69)||(15682928-15682990)
chr8 (7-77)||(35206991-35207061)
chr8 (15-85)||(44705655-44705725)
chr8 (14-61)||(16701466-16701513)
chr8 (1-76)||(27121824-27121899)
chr8 (38-77)||(39086809-39086848)
chr8 (7-77)||(36994580-36994650)
[»] chr7 (13 HSPs)
chr7 (1-85)||(19477323-19477407)
chr7 (1-85)||(29059788-29059872)
chr7 (7-77)||(28537381-28537451)
chr7 (1-74)||(31492097-31492170)
chr7 (7-77)||(2657916-2657986)
chr7 (7-77)||(8839361-8839431)
chr7 (7-77)||(13254181-13254251)
chr7 (8-85)||(21747121-21747197)
chr7 (40-85)||(42741925-42741970)
chr7 (7-78)||(27484129-27484200)
chr7 (7-85)||(7265393-7265471)
chr7 (43-77)||(40099388-40099422)
chr7 (40-77)||(5905813-5905850)
[»] chr4 (14 HSPs)
chr4 (1-85)||(31307140-31307224)
chr4 (7-77)||(14854596-14854666)
chr4 (7-85)||(45994505-45994583)
chr4 (7-77)||(38766080-38766150)
chr4 (7-78)||(35334178-35334249)
chr4 (10-77)||(35972334-35972401)
chr4 (38-77)||(10199215-10199254)
chr4 (7-77)||(13686592-13686662)
chr4 (7-73)||(38844248-38844314)
chr4 (7-77)||(51853689-51853758)
chr4 (6-74)||(32005230-32005298)
chr4 (7-56)||(11140469-11140518)
chr4 (1-57)||(36402056-36402113)
chr4 (1-60)||(46016154-46016216)
[»] chr2 (15 HSPs)
chr2 (1-85)||(44732647-44732731)
chr2 (1-85)||(37568801-37568885)
chr2 (7-77)||(5394388-5394458)
chr2 (7-87)||(18105442-18105522)
chr2 (1-85)||(31579303-31579387)
chr2 (7-77)||(42745196-42745266)
chr2 (7-77)||(28365940-28366010)
chr2 (7-77)||(12133310-12133380)
chr2 (7-77)||(7157489-7157559)
chr2 (7-85)||(9438216-9438294)
chr2 (7-77)||(17627550-17627620)
chr2 (7-77)||(17981489-17981559)
chr2 (38-85)||(7020469-7020516)
chr2 (7-77)||(993745-993815)
chr2 (7-59)||(38463964-38464016)
[»] chr6 (7 HSPs)
chr6 (7-77)||(12411139-12411209)
chr6 (7-78)||(21029063-21029134)
chr6 (7-85)||(21910188-21910266)
chr6 (7-78)||(31107573-31107644)
chr6 (8-77)||(423646-423715)
chr6 (1-60)||(28099251-28099310)
chr6 (40-73)||(15614686-15614719)
[»] chr1 (9 HSPs)
chr1 (7-85)||(22022103-22022181)
chr1 (7-77)||(16756073-16756143)
chr1 (9-77)||(10841008-10841076)
chr1 (2-77)||(45806227-45806302)
chr1 (2-84)||(7624859-7624940)
chr1 (38-77)||(14500369-14500408)
chr1 (7-78)||(17600578-17600649)
chr1 (7-78)||(29124735-29124806)
chr1 (1-57)||(18428215-18428271)
[»] scaffold0182 (1 HSPs)
scaffold0182 (1-67)||(26332-26398)
[»] chr3 (11 HSPs)
chr3 (7-77)||(30996045-30996115)
chr3 (7-77)||(48204391-48204461)
chr3 (7-77)||(38088626-38088696)
chr3 (1-77)||(27763714-27763788)
chr3 (28-77)||(46604661-46604710)
chr3 (7-66)||(48211040-48211099)
chr3 (23-77)||(25224690-25224744)
chr3 (40-77)||(38331119-38331156)
chr3 (7-85)||(15283058-15283133)
chr3 (6-77)||(14352545-14352616)
chr3 (3-77)||(42514595-42514669)
[»] scaffold0009 (1 HSPs)
scaffold0009 (7-84)||(32344-32421)
[»] scaffold0020 (1 HSPs)
scaffold0020 (7-77)||(167846-167914)


Alignment Details
Target: chr5 (Bit Score: 117; Significance: 1e-59; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 89 - 234
Target Start/End: Original strand, 3647590 - 3647736
Alignment:
Q  89 tgtaggagtatttgatatattata--atttaaatacatcatttttgtaacacattaatgacttgtatttttcgtgattaacgaaataataaaatgattaa 186  Q
    ||||||||||||| ||||||||||  |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||    
T  3647590 tgtaggagtattttatatattatataatttaaatacatcatttttgtaacactttaatgacttgtatttttcgtgattaacgaa-taataaaatgattaa 3647688  T
Q  187 tacattatattttatagggtgttacgaaaatgcttctctatatctctg 234  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||    
T  3647689 tacattatatgttatagggtgttacgaaaatgcttctctatatctctg 3647736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 10591994 - 10591910
Alignment:
Q  1 cactgatgcatgcccaaggctggatttgaacccagagccttggttaagttagaagagacccgttccatctcatctaaatgctctt 85  Q
    ||||| |||||||||||||||||||| ||||||||  ||||||||||  |||||||||||||||||||||||||||| |||||||    
T  10591994 cactgctgcatgcccaaggctggattcgaacccaggaccttggttaatctagaagagacccgttccatctcatctaagtgctctt 10591910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 2798395 - 2798472
Alignment:
Q  7 tgcatgcccaaggctggatttgaacccagagccttggttaagttagaagagacccgttccatctcatctaaatgctctt 85  Q
    ||||||| ||||| |||||| ||||||||| ||||||||||| ||||||| | ||||| |||||||||||| |||||||    
T  2798395 tgcatgctcaaggttggattcgaacccagaaccttggttaagctagaaga-aaccgtttcatctcatctaactgctctt 2798472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 30785066 - 30785144
Alignment:
Q  7 tgcatgcccaaggctggatttgaacccagagccttggttaagttagaagagacccgttccatctcatctaaatgctctt 85  Q
    |||||| |||| |||||||| |||||||   | ||| ||||| |||||||||| |||||||||||||||||||||||||    
T  30785066 tgcatgtccaaagctggattcgaacccaagacattgattaagctagaagagactcgttccatctcatctaaatgctctt 30785144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 31113401 - 31113317
Alignment:
Q  1 cactgatgcatgcccaaggctggatttgaacccagagccttggttaagttagaagagacccgttccatctcatctaaatgctctt 85  Q
    ||||| |||||||||||||||| ||| ||||| ||| ||||  ||||| || || ||||||||| ||||||||||||||| ||||    
T  31113401 cactgctgcatgcccaaggctgaattcgaacctagaaccttaattaagctaaaaaagacccgtttcatctcatctaaatgttctt 31113317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 77
Target Start/End: Original strand, 22188079 - 22188146
Alignment:
Q  10 atgcccaaggctggatttgaacccagagccttggttaagttagaagagacccgttccatctcatctaa 77  Q
    |||||||||||||||||  ||||||   |||||||||||||||||||||  ||||| |||||||||||    
T  22188079 atgcccaaggctggattcaaacccaataccttggttaagttagaagagattcgttcaatctcatctaa 22188146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 77
Target Start/End: Original strand, 28023526 - 28023593
Alignment:
Q  10 atgcccaaggctggatttgaacccagagccttggttaagttagaagagacccgttccatctcatctaa 77  Q
    ||||| ||||||||||| |||| |||  | ||||||||| ||||||||| ||||||||||||||||||    
T  28023526 atgcctaaggctggattcgaactcaggacattggttaagctagaagagatccgttccatctcatctaa 28023593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 2804562 - 2804639
Alignment:
Q  7 tgcatgcccaaggctggatttgaacccagagccttggttaagttagaagagacccgttccatctcatctaaatgctctt 85  Q
    ||||||| ||||| |||||| ||||||| | ||||||||||| ||||||| | ||||| |||||||||||| |||||||    
T  2804562 tgcatgctcaaggttggattcgaacccaaaaccttggttaagctagaaga-aaccgtttcatctcatctaactgctctt 2804639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 78
Target Start/End: Complemental strand, 12682696 - 12682625
Alignment:
Q  7 tgcatgcccaaggctggatttgaacccagagccttggttaagttagaagagacccgttccatctcatctaaa 78  Q
    ||||||| |||||||||||| |||| |||| | ||| ||||| |||||||||| |||| |||||||| ||||    
T  12682696 tgcatgctcaaggctggattcgaactcagaacattgcttaagctagaagagactcgtttcatctcatttaaa 12682625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 2744000 - 2743916
Alignment:
Q  1 cactgatgcatgcccaaggctggatttgaacccagagccttggttaagttagaagagacccgttccatctcatctaaatgctctt 85  Q
    ||||| |||||||||||||||||||| ||||||||  ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  2744000 cactgctgcatgcccaaggctggattcgaacccaggaccttggttaagctagaagagacccgttccatctcatctaaatgctctt 2743916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 4125104 - 4125182
Alignment:
Q  7 tgcatgcccaaggctggatttgaacccagagccttggttaagttagaagagacccgttccatctcatctaaatgctctt 85  Q
    ||||||||||||||| |||| ||||||||  | ||||||||| |||||||||||||||||||||||||||| |||||||    
T  4125104 tgcatgcccaaggcttgattcgaacccaggacattggttaagctagaagagacccgttccatctcatctaagtgctctt 4125182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 30936065 - 30935987
Alignment:
Q  7 tgcatgcccaaggctggatttgaacccagagccttggttaagttagaagagacccgttccatctcatctaaatgctctt 85  Q
    |||||||  ||||||||||| |||| |||  |||||||||||||||||||||||||||||||||||||||| |||||||    
T  30936065 tgcatgcttaaggctggattcgaactcaggaccttggttaagttagaagagacccgttccatctcatctaagtgctctt 30935987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 13468827 - 13468895
Alignment:
Q  9 catgcccaaggctggatttgaacccagagccttggttaagttagaagagacccgttccatctcatctaa 77  Q
    |||||||||||||||||| ||||||||  ||||||||||| ||||||||||||||||||||| ||||||    
T  13468827 catgcccaaggctggattcgaacccaggaccttggttaagctagaagagacccgttccatctaatctaa 13468895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 77
Target Start/End: Original strand, 19715806 - 19715876
Alignment:
Q  7 tgcatgcccaaggctggatttgaacccagagccttggttaagttagaagagacccgttccatctcatctaa 77  Q
    |||||||||||||||||||| ||||||||  ||||||||||| ||||| ||||  ||||||||||||||||    
T  19715806 tgcatgcccaaggctggattcgaacccaggaccttggttaagctagaaaagacatgttccatctcatctaa 19715876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 7 - 78
Target Start/End: Original strand, 30056081 - 30056152
Alignment:
Q  7 tgcatgcccaaggctggatttgaacccagagccttggttaagttagaagagacccgttccatctcatctaaa 78  Q
    |||||||| |||||||||||||||||||   |||| |||||| ||||||||||  |||||||||||||||||    
T  30056081 tgcatgcctaaggctggatttgaacccatgaccttcgttaagctagaagagacatgttccatctcatctaaa 30056152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 77
Target Start/End: Original strand, 12958165 - 12958235
Alignment:
Q  7 tgcatgcccaaggctggatttgaacccagagccttggttaagttagaagagacccgttccatctcatctaa 77  Q
    ||||||||||| ||||||||  ||||||   ||||||||||| ||||||||||  ||||||||||||||||    
T  12958165 tgcatgcccaatgctggattcaaacccatgaccttggttaagctagaagagactagttccatctcatctaa 12958235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 69
Target Start/End: Complemental strand, 15682990 - 15682928
Alignment:
Q  7 tgcatgcccaaggctggatttgaacccagagccttggttaagttagaagagacccgttccatc 69  Q
    |||||||||||||||||||| |||| |||  ||||| ||||| |||||||||| |||||||||    
T  15682990 tgcatgcccaaggctggattcgaactcaggaccttgattaagctagaagagactcgttccatc 15682928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 35207061 - 35206991
Alignment:
Q  7 tgcatgcccaaggctggatttgaacccagagccttggttaagttagaagagacccgttccatctcatctaa 77  Q
    |||||| |||||| |  ||| |||||||||  |||||||||||||||||||||| ||| ||||||||||||    
T  35207061 tgcatgtccaaggttaaattcgaacccagaatcttggttaagttagaagagacctgtttcatctcatctaa 35206991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 44705725 - 44705655
Alignment:
Q  15 caaggctggatttgaacccagagccttggttaagttagaagagacccgttccatctcatctaaatgctctt 85  Q
    |||||||||||| |||||||   ||||||||||  ||||||||||| |||||||| |||||||| ||||||    
T  44705725 caaggctggattcgaacccaagaccttggttaaactagaagagacctgttccatcccatctaaacgctctt 44705655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 61
Target Start/End: Original strand, 16701466 - 16701513
Alignment:
Q  14 ccaaggctggatttgaacccagagccttggttaagttagaagagaccc 61  Q
    ||||||||||||| ||||||||| |||| |||||| ||||||||||||    
T  16701466 ccaaggctggattcgaacccagaaccttagttaagatagaagagaccc 16701513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 27121824 - 27121899
Alignment:
Q  1 cactgatgcatgcccaaggctggatttgaacccagagccttggttaagttagaagagacccgttccatctcatcta 76  Q
    ||||| |||||||  || |||||||| ||||||||| | ||||||||| ||||||||||||||   ||||||||||    
T  27121824 cactgttgcatgcttaaagctggattcgaacccagaactttggttaagctagaagagacccgtgttatctcatcta 27121899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 77
Target Start/End: Complemental strand, 39086848 - 39086809
Alignment:
Q  38 ccttggttaagttagaagagacccgttccatctcatctaa 77  Q
    ||||||||||| |||||||| |||||||||||||||||||    
T  39086848 ccttggttaagctagaagaggcccgttccatctcatctaa 39086809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 77
Target Start/End: Original strand, 36994580 - 36994650
Alignment:
Q  7 tgcatgcccaaggctggatttgaacccagagccttggttaagttagaagagacccgttccatctcatctaa 77  Q
    |||||| ||||||||||||| ||||||||  ||||||||||  ||||||||||  || |||||| ||||||    
T  36994580 tgcatgtccaaggctggattcgaacccaggaccttggttaaactagaagagacatgtgccatcttatctaa 36994650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 19477323 - 19477407
Alignment:
Q  1 cactgatgcatgcccaaggctggatttgaacccagagccttggttaagttagaagagacccgttccatctcatctaaatgctctt 85  Q
    ||||| ||||||||||||||||||||  |||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  19477323 cactgttgcatgcccaaggctggattcaaacccagaaccttggttaagctagaagagacccgttccatctcatctaaacgctctt 19477407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 29059872 - 29059788
Alignment:
Q  1 cactgatgcatgcccaaggctggatttgaacccagagccttggttaagttagaagagacccgttccatctcatctaaatgctctt 85  Q
    ||||| |||||||||||||||||||| ||||||||  ||||||||||| |||||||||||||||||||||||||||| |||||||    
T  29059872 cactgctgcatgcccaaggctggattcgaacccaggaccttggttaagctagaagagacccgttccatctcatctaagtgctctt 29059788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 28537451 - 28537381
Alignment:
Q  7 tgcatgcccaaggctggatttgaacccagagccttggttaagttagaagagacccgttccatctcatctaa 77  Q
    |||||||||||||||||||| ||||||| | ||||| ||||||||||||||||||||||||||||||||||    
T  28537451 tgcatgcccaaggctggattcgaacccaaaaccttgattaagttagaagagacccgttccatctcatctaa 28537381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 31492170 - 31492097
Alignment:
Q  1 cactgatgcatgcccaaggctggatttgaacccagagccttggttaagttagaagagacccgttccatctcatc 74  Q
    ||||| |||||||||||||||||||| ||||||||  ||||||||||| |||||||||||||||||||||||||    
T  31492170 cactgctgcatgcccaaggctggattcgaacccaggaccttggttaagctagaagagacccgttccatctcatc 31492097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 7 - 77
Target Start/End: Original strand, 2657916 - 2657986
Alignment:
Q  7 tgcatgcccaaggctggatttgaacccagagccttggttaagttagaagagacccgttccatctcatctaa 77  Q
    |||||||||||||||| |||||||| ||| |||||| |||||||||||||||| |||||||||||||||||    
T  2657916 tgcatgcccaaggctgtatttgaactcagggccttgattaagttagaagagactcgttccatctcatctaa 2657986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 7 - 77
Target Start/End: Original strand, 8839361 - 8839431
Alignment:
Q  7 tgcatgcccaaggctggatttgaacccagagccttggttaagttagaagagacccgttccatctcatctaa 77  Q
    |||||||||||||||||||| ||||||||  ||||||||||| ||||||||||||||| ||||||||||||    
T  8839361 tgcatgcccaaggctggattcgaacccaggaccttggttaagctagaagagacccgtttcatctcatctaa 8839431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 7 - 77
Target Start/End: Original strand, 13254181 - 13254251
Alignment:
Q  7 tgcatgcccaaggctggatttgaacccagagccttggttaagttagaagagacccgttccatctcatctaa 77  Q
    |||||||| ||||||||||| |||| |||  ||||||||||| ||||||||||||||||||||||||||||    
T  13254181 tgcatgcctaaggctggattcgaactcaggaccttggttaagctagaagagacccgttccatctcatctaa 13254251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 85
Target Start/End: Original strand, 21747121 - 21747197
Alignment:
Q  8 gcatgcccaaggctggatttgaacccagagccttggttaagttagaagagacccgttccatctcatctaaatgctctt 85  Q
    ||||||| || |||||||| || |||||  ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  21747121 gcatgcctaaagctggattcga-cccaggaccttggttaagttagaagagacccgttccatctcatctaaacgctctt 21747197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 85
Target Start/End: Original strand, 42741925 - 42741970
Alignment:
Q  40 ttggttaagttagaagagacccgttccatctcatctaaatgctctt 85  Q
    ||||||||| ||||||||||| ||||||||||||||||| ||||||    
T  42741925 ttggttaagatagaagagacctgttccatctcatctaaacgctctt 42741970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 78
Target Start/End: Original strand, 27484129 - 27484200
Alignment:
Q  7 tgcatgcccaaggctggatttgaacccagagccttggttaagttagaagagacccgttccatctcatctaaa 78  Q
    |||||||||| |||||||||| ||| |||  ||||||||||| ||||||||||  ||  |||||||||||||    
T  27484129 tgcatgcccatggctggatttaaactcaggaccttggttaagctagaagagacttgtgtcatctcatctaaa 27484200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 7265393 - 7265471
Alignment:
Q  7 tgcatgcccaaggctggatttgaacccagagccttggttaagttagaagagacccgttccatctcatctaaatgctctt 85  Q
    |||||||||||| || |||  ||||||| | | ||||||||| ||||||||||||||  |||||||| |||| ||||||    
T  7265393 tgcatgcccaagactagatccgaacccaaaactttggttaagctagaagagacccgtgtcatctcatataaacgctctt 7265471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 77
Target Start/End: Original strand, 40099388 - 40099422
Alignment:
Q  43 gttaagttagaagagacccgttccatctcatctaa 77  Q
    |||||| ||||||||||||||||||||||||||||    
T  40099388 gttaagctagaagagacccgttccatctcatctaa 40099422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 77
Target Start/End: Complemental strand, 5905850 - 5905813
Alignment:
Q  40 ttggttaagttagaagagacccgttccatctcatctaa 77  Q
    |||||||||||||||||||| ||||| |||||||||||    
T  5905850 ttggttaagttagaagagactcgttctatctcatctaa 5905813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 31307140 - 31307224
Alignment:
Q  1 cactgatgcatgcccaaggctggatttgaacccagagccttggttaagttagaagagacccgttccatctcatctaaatgctctt 85  Q
    ||||| |||||||||||||||||||| ||||||||  ||||||||||| |||||||||||||||||||||||||||| |||||||    
T  31307140 cactgctgcatgcccaaggctggattcgaacccaggaccttggttaagctagaagagacccgttccatctcatctaagtgctctt 31307224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 14854666 - 14854596
Alignment:
Q  7 tgcatgcccaaggctggatttgaacccagagccttggttaagttagaagagacccgttccatctcatctaa 77  Q
    |||||||||||||||||||| ||||||||| ||||||||||| ||||||||| ||||||||||||||||||    
T  14854666 tgcatgcccaaggctggattcgaacccagaaccttggttaagctagaagagaaccgttccatctcatctaa 14854596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 45994583 - 45994505
Alignment:
Q  7 tgcatgcccaaggctggatttgaacccagagccttggttaagttagaagagacccgttccatctcatctaaatgctctt 85  Q
    |||||||||||||||||||| ||| ||||  ||||||||||| ||||||||||| ||||||||||||||||| ||||||    
T  45994583 tgcatgcccaaggctggattcgaatccaggaccttggttaagctagaagagacctgttccatctcatctaaacgctctt 45994505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 38766150 - 38766080
Alignment:
Q  7 tgcatgcccaaggctggatttgaacccagagccttggttaagttagaagagacccgttccatctcatctaa 77  Q
    ||||||||||||||||||||  |||||||  ||||||||||| |||||||||| |||||||||||||||||    
T  38766150 tgcatgcccaaggctggattcaaacccaggaccttggttaagctagaagagactcgttccatctcatctaa 38766080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 7 - 78
Target Start/End: Original strand, 35334178 - 35334249
Alignment:
Q  7 tgcatgcccaaggctggatttgaacccagagccttggttaagttagaagagacccgttccatctcatctaaa 78  Q
    |||||||||||||||| ||  ||||| ||| ||||||||||| ||||||||||  |||||||||||||||||    
T  35334178 tgcatgcccaaggctgaatacgaaccaagaaccttggttaagctagaagagacttgttccatctcatctaaa 35334249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 77
Target Start/End: Complemental strand, 35972401 - 35972334
Alignment:
Q  10 atgcccaaggctggatttgaacccagagccttggttaagttagaagagacccgttccatctcatctaa 77  Q
    ||||||| ||||||||| |||||||   ||||||||||| |||||||| |||||||||||||||||||    
T  35972401 atgcccatggctggattcgaacccaagaccttggttaagctagaagaggcccgttccatctcatctaa 35972334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 77
Target Start/End: Original strand, 10199215 - 10199254
Alignment:
Q  38 ccttggttaagttagaagagacccgttccatctcatctaa 77  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  10199215 ccttggttaagttataagagacccgttccatctcatctaa 10199254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 13686662 - 13686592
Alignment:
Q  7 tgcatgcccaaggctggatttgaacccagagccttggttaagttagaagagacccgttccatctcatctaa 77  Q
    |||| |||||||| |||||| ||||||||  |||||||||||  ||||||||||| | |||||||||||||    
T  13686662 tgcacgcccaaggatggattcgaacccaggaccttggttaagcaagaagagacccatgccatctcatctaa 13686592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 38844248 - 38844314
Alignment:
Q  7 tgcatgcccaaggctggatttgaacccagagccttggttaagttagaagagacccgttccatctcat 73  Q
    ||||||||||| |||||||| |||| ||   ||||||||||| |||||||||| |||||||||||||    
T  38844248 tgcatgcccaaagctggattcgaactcatgaccttggttaagctagaagagactcgttccatctcat 38844314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 51853758 - 51853689
Alignment:
Q  7 tgcatgcccaaggctggatttgaacccagagccttggttaagttagaagagacccgttccatctcatctaa 77  Q
    |||||||||||||||| ||| ||||| ||| | |||||||||||||||||||| | ||| |||||||||||    
T  51853758 tgcatgcccaaggctgaattcgaacc-agaactttggttaagttagaagagactcattctatctcatctaa 51853689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 74
Target Start/End: Original strand, 32005230 - 32005298
Alignment:
Q  6 atgcatgcccaaggctggatttgaacccagagccttggttaagttagaagagacccgttccatctcatc 74  Q
    |||||||||||| |||| ||| |||| |||  | |||||||||||||||||||||  ||||||||||||    
T  32005230 atgcatgcccaaagctgaattcgaactcaggactttggttaagttagaagagacctattccatctcatc 32005298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 11140518 - 11140469
Alignment:
Q  7 tgcatgcccaaggctggatttgaacccagagccttggttaagttagaaga 56  Q
    |||||||||||||||||||| ||| ||||  ||||||||||| |||||||    
T  11140518 tgcatgcccaaggctggattcgaaaccaggaccttggttaagctagaaga 11140469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 36402113 - 36402056
Alignment:
Q  1 cactgatgcatgcccaaggctggatttgaacccagagcct-tggttaagttagaagag 57  Q
    |||||||||||||||| |||| |||| ||||| ||||||| ||||||||||| |||||    
T  36402113 cactgatgcatgcccatggcttgattagaacctagagcctatggttaagttataagag 36402056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 46016216 - 46016154
Alignment:
Q  1 cactgatgcatgcccaaggctggatttgaacccagagc---cttggttaagttagaagagacc 60  Q
    ||||| |||||||||||||||||||| ||||||||  |   |||||||||| |||||||||||    
T  46016216 cactgctgcatgcccaaggctggattcgaacccaggacctacttggttaagctagaagagacc 46016154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 6e-24; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 44732647 - 44732731
Alignment:
Q  1 cactgatgcatgcccaaggctggatttgaacccagagccttggttaagttagaagagacccgttccatctcatctaaatgctctt 85  Q
    ||||| |||||||||||||||||||| ||||||||  ||||||||||| || ||||||||||||||||||||||||| |||||||    
T  44732647 cactgctgcatgcccaaggctggattcgaacccaggaccttggttaagctataagagacccgttccatctcatctaagtgctctt 44732731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 37568801 - 37568885
Alignment:
Q  1 cactgatgcatgcccaaggctggatttgaacccagagccttggttaagttagaagagacccgttccatctcatctaaatgctctt 85  Q
    ||||| |||||||| ||||||||||| ||||||||  ||||||||||| ||||||| |||||||||||||||||||| |||||||    
T  37568801 cactgctgcatgcctaaggctggattcgaacccaggaccttggttaagctagaagaaacccgttccatctcatctaagtgctctt 37568885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 5394458 - 5394388
Alignment:
Q  7 tgcatgcccaaggctggatttgaacccagagccttggttaagttagaagagacccgttccatctcatctaa 77  Q
    |||||||||||||||||||| ||||||||  ||||||||||| |||||||||| |||||||||||||||||    
T  5394458 tgcatgcccaaggctggattcgaacccaggaccttggttaagctagaagagactcgttccatctcatctaa 5394388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 7 - 87
Target Start/End: Original strand, 18105442 - 18105522
Alignment:
Q  7 tgcatgcccaaggctggatttgaacccagagccttggttaagttagaagagacccgttccatctcatctaaatgctcttag 87  Q
    |||||||||||||||||||| ||||||||  ||||||||||| |||||||||| ||||||||||||| |||  ||||||||    
T  18105442 tgcatgcccaaggctggattcgaacccaggaccttggttaagctagaagagactcgttccatctcatataagcgctcttag 18105522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 31579303 - 31579387
Alignment:
Q  1 cactgatgcatgcccaaggctggatttgaacccagagccttggttaagttagaagagacccgttccatctcatctaaatgctctt 85  Q
    ||||| |||||||||||||||||||| |||||||   ||||| ||||| ||||||||||||||| |||||||||||| |||||||    
T  31579303 cactgttgcatgcccaaggctggattcgaacccaagaccttgattaagctagaagagacccgttacatctcatctaagtgctctt 31579387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 7 - 77
Target Start/End: Original strand, 42745196 - 42745266
Alignment:
Q  7 tgcatgcccaaggctggatttgaacccagagccttggttaagttagaagagacccgttccatctcatctaa 77  Q
    |||||||||||||||||||| |||||||   ||||||||||| || |||||||||||||||||||||||||    
T  42745196 tgcatgcccaaggctggattcgaacccaagaccttggttaagctataagagacccgttccatctcatctaa 42745266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 28366010 - 28365940
Alignment:
Q  7 tgcatgcccaaggctggatttgaacccagagccttggttaagttagaagagacccgttccatctcatctaa 77  Q
    |||||||||||||||| ||| |||| ||   |||||||||||||||||||||| |||||||||||||||||    
T  28366010 tgcatgcccaaggctgcattcgaactcacgaccttggttaagttagaagagacgcgttccatctcatctaa 28365940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 77
Target Start/End: Original strand, 12133310 - 12133380
Alignment:
Q  7 tgcatgcccaaggctggatttgaacccagagccttggttaagttagaagagacccgttccatctcatctaa 77  Q
    |||||| ||||||||||||| |||||||   ||||| ||||| |||||||||| |||||||||||||||||    
T  12133310 tgcatgtccaaggctggattcgaacccatgaccttgattaagctagaagagactcgttccatctcatctaa 12133380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 7157559 - 7157489
Alignment:
Q  7 tgcatgcccaaggctggatttgaacccagagccttggttaagttagaagagacccgttccatctcatctaa 77  Q
    ||||||||||||||| |||| ||||| ||   ||||||||||||||||||||| ||||| ||| |||||||    
T  7157559 tgcatgcccaaggctagattcgaacctaggatcttggttaagttagaagagactcgttctatcccatctaa 7157489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 9438216 - 9438294
Alignment:
Q  7 tgcatgcccaaggctggatttgaacccagagccttggttaagttagaagagacccgttccatctcatctaaatgctctt 85  Q
    |||||||||||||||||||| ||||| |   | ||||||||| || ||||||  |||||||||||||||||| ||||||    
T  9438216 tgcatgcccaaggctggattcgaaccaaagactttggttaagctaaaagagattcgttccatctcatctaaacgctctt 9438294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 17627620 - 17627550
Alignment:
Q  7 tgcatgcccaaggctggatttgaacccagagccttggttaagttagaagagacccgttccatctcatctaa 77  Q
    |||||||||||||||||||| |||| |||  |||||||||| ||||||||||| |||  |||||| |||||    
T  17627620 tgcatgcccaaggctggattcgaactcaggaccttggttaaattagaagagacgcgtgtcatctcgtctaa 17627550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 17981559 - 17981489
Alignment:
Q  7 tgcatgcccaaggctggatttgaacccagagccttggttaagttagaagagacccgttccatctcatctaa 77  Q
    |||||||||||| |||||||| ||  |||  | ||||||||| |||||||||| |||||||||||||||||    
T  17981559 tgcatgcccaagactggatttaaattcaggactttggttaagctagaagagactcgttccatctcatctaa 17981489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 85
Target Start/End: Original strand, 7020469 - 7020516
Alignment:
Q  38 ccttggttaagttagaagagacccgttccatctcatctaaatgctctt 85  Q
    ||||||||||| |||||||||||||| | |||||||||||| ||||||    
T  7020469 ccttggttaagctagaagagacccgtgcaatctcatctaaacgctctt 7020516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 993815 - 993745
Alignment:
Q  7 tgcatgcccaaggctggatttgaacccagagccttggttaagttagaagagacccgttccatctcatctaa 77  Q
    ||||||||||||| || ||| ||||||||  ||||||||||| || ||||||| |||  ||||||||||||    
T  993815 tgcatgcccaaggttgaattcgaacccaggaccttggttaagctataagagacacgtgtcatctcatctaa 993745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 59
Target Start/End: Complemental strand, 38464016 - 38463964
Alignment:
Q  7 tgcatgcccaaggctggatttgaacccagagccttggttaagttagaagagac 59  Q
    |||||||||||||||||||| ||| | ||| | ||||||||||||||| ||||    
T  38464016 tgcatgcccaaggctggattcgaatctagaactttggttaagttagaaaagac 38463964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 12411209 - 12411139
Alignment:
Q  7 tgcatgcccaaggctggatttgaacccagagccttggttaagttagaagagacccgttccatctcatctaa 77  Q
    |||||||||||||||||||| |||| |||  ||||||||||||||||||||||| ||||||||||||||||    
T  12411209 tgcatgcccaaggctggattcgaactcaggaccttggttaagttagaagagacctgttccatctcatctaa 12411139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 7 - 78
Target Start/End: Original strand, 21029063 - 21029134
Alignment:
Q  7 tgcatgcccaaggctggatttgaacccagagccttggttaagttagaagagacccgttccatctcatctaaa 78  Q
    |||||||||||||||||||| |||||||   ||||||||||| |||||||||||||| ||||||||| ||||    
T  21029063 tgcatgcccaaggctggattcgaacccaagaccttggttaagctagaagagacccgtgccatctcatataaa 21029134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 21910266 - 21910188
Alignment:
Q  7 tgcatgcccaaggctggatttgaacccagagccttggttaagttagaagagacccgttccatctcatctaaatgctctt 85  Q
    |||||||||||||||||||| ||||||||   |||||||||| ||||||||||  ||| ||||||||||||| ||||||    
T  21910266 tgcatgcccaaggctggattcgaacccaggatcttggttaagctagaagagacttgtttcatctcatctaaacgctctt 21910188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 7 - 78
Target Start/End: Original strand, 31107573 - 31107644
Alignment:
Q  7 tgcatgcccaaggctggatttgaacccagagccttggttaagttagaagagacccgttccatctcatctaaa 78  Q
    |||||| |||| |||||||| |||| |||| |||| ||||||||||||||||||| || |||||||||||||    
T  31107573 tgcatgtccaatgctggattcgaactcagaaccttagttaagttagaagagacccatttcatctcatctaaa 31107644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 423715 - 423646
Alignment:
Q  8 gcatgcccaaggctggatttgaacccagagccttggttaagttagaagagacccgttccatctcatctaa 77  Q
    |||||||||||||||||||  |||||| | ||||||||||  ||||||||| | ||||||||||||||||    
T  423715 gcatgcccaaggctggattcaaacccaaaaccttggttaaactagaagagatctgttccatctcatctaa 423646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 28099310 - 28099251
Alignment:
Q  1 cactgatgcatgcccaaggctggatttgaacccagagccttggttaagttagaagagacc 60  Q
    ||||| |||||||||||||||||||| ||||||||  |||| |||||| |||||||||||    
T  28099310 cactgctgcatgcccaaggctggattcgaacccaggaccttagttaaggtagaagagacc 28099251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 73
Target Start/End: Original strand, 15614686 - 15614719
Alignment:
Q  40 ttggttaagttagaagagacccgttccatctcat 73  Q
    |||||||||||||||||||| |||||||||||||    
T  15614686 ttggttaagttagaagagactcgttccatctcat 15614719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 22022181 - 22022103
Alignment:
Q  7 tgcatgcccaaggctggatttgaacccagagccttggttaagttagaagagacccgttccatctcatctaaatgctctt 85  Q
    |||||||||||||||||||| ||||||| | |||| |||||| ||||||||||| ||||||||||||||||| ||||||    
T  22022181 tgcatgcccaaggctggattcgaacccacaaccttagttaagctagaagagacctgttccatctcatctaaacgctctt 22022103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 16756143 - 16756073
Alignment:
Q  7 tgcatgcccaaggctggatttgaacccagagccttggttaagttagaagagacccgttccatctcatctaa 77  Q
    ||||||||||| |||| |||  |||||||| ||||||||||| ||||||||| ||||||||||||||||||    
T  16756143 tgcatgcccaatgctgaattcaaacccagaaccttggttaagctagaagagatccgttccatctcatctaa 16756073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 10841076 - 10841008
Alignment:
Q  9 catgcccaaggctggatttgaacccagagccttggttaagttagaagagacccgttccatctcatctaa 77  Q
    |||||||||||||| ||||||||||| |  |||||||||| ||||||||||| ||| ||||||||||||    
T  10841076 catgcccaaggctgaatttgaacccaaaatcttggttaagatagaagagacctgtttcatctcatctaa 10841008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 77
Target Start/End: Complemental strand, 45806302 - 45806227
Alignment:
Q  2 actgatgcatgcccaaggctggatttgaacccagagccttggttaagttagaagagacccgttccatctcatctaa 77  Q
    |||| |||||||||||| ||| ||| |||| |||  ||||||||||| |||||||||||||||| |||||||||||    
T  45806302 actgctgcatgcccaagactgaattcgaactcaggaccttggttaagatagaagagacccgttctatctcatctaa 45806227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 84
Target Start/End: Complemental strand, 7624940 - 7624859
Alignment:
Q  2 actgatgcatgcccaaggctggatttgaacccagagccttggttaagttagaagagacccgttccatctcatctaaatgctct 84  Q
    |||| |||||| ||||||||||||||||||||| |  |||||||||| ||||| ||||  |||||||||||| |||| |||||    
T  7624940 actgttgcatgtccaaggctggatttgaacccataatcttggttaagctagaa-agacttgttccatctcatttaaacgctct 7624859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 77
Target Start/End: Original strand, 14500369 - 14500408
Alignment:
Q  38 ccttggttaagttagaagagacccgttccatctcatctaa 77  Q
    ||||||||||| |||||||||||||||||||| |||||||    
T  14500369 ccttggttaagctagaagagacccgttccatcgcatctaa 14500408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 78
Target Start/End: Original strand, 17600578 - 17600649
Alignment:
Q  7 tgcatgcccaaggctggatttgaacccagagccttggttaagttagaagagacccgttccatctcatctaaa 78  Q
    ||||||| |||||||| |||  ||||||   ||||||||||| ||||||||||||||  |||||||||||||    
T  17600578 tgcatgctcaaggctgaattctaacccaagaccttggttaagctagaagagacccgtgtcatctcatctaaa 17600649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 78
Target Start/End: Complemental strand, 29124806 - 29124735
Alignment:
Q  7 tgcatgcccaaggctggatttgaacccagagccttggttaagttagaagagacccgttccatctcatctaaa 78  Q
    ||||||||||| |||||||| |||| ||   || |||||||| |||||||||| |||| |||||||||||||    
T  29124806 tgcatgcccaatgctggattcgaactcatgaccctggttaagctagaagagactcgtttcatctcatctaaa 29124735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 18428215 - 18428271
Alignment:
Q  1 cactgatgcatgcccaaggctggatttgaacccagagccttggttaagttagaagag 57  Q
    ||||| ||||||||||||| |||||| ||| ||||| ||||||||||| || |||||    
T  18428215 cactgctgcatgcccaaggttggattcgaatccagaaccttggttaagctacaagag 18428271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 26398 - 26332
Alignment:
Q  1 cactgatgcatgcccaaggctggatttgaacccagagccttggttaagttagaagagacccgttcca 67  Q
    ||||| |||||||||||||||||||| ||||||||  ||||||||||| ||||||||||||||||||    
T  26398 cactgctgcatgcccaaggctggattcgaacccaggaccttggttaagctagaagagacccgttcca 26332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 7 - 77
Target Start/End: Original strand, 30996045 - 30996115
Alignment:
Q  7 tgcatgcccaaggctggatttgaacccagagccttggttaagttagaagagacccgttccatctcatctaa 77  Q
    |||||||||||||  ||||| ||||||||  ||||||||||| ||||||||||||||||||||||||||||    
T  30996045 tgcatgcccaaggtcggattcgaacccaggaccttggttaagatagaagagacccgttccatctcatctaa 30996115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 7 - 77
Target Start/End: Original strand, 48204391 - 48204461
Alignment:
Q  7 tgcatgcccaaggctggatttgaacccagagccttggttaagttagaagagacccgttccatctcatctaa 77  Q
    |||||||||||||||||||| |||||||   ||||||||||| |||||||||| |||||||||||||||||    
T  48204391 tgcatgcccaaggctggattcgaacccaagaccttggttaagctagaagagactcgttccatctcatctaa 48204461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 38088696 - 38088626
Alignment:
Q  7 tgcatgcccaaggctggatttgaacccagagccttggttaagttagaagagacccgttccatctcatctaa 77  Q
    ||||||||||| |||||||| |||||  || ||||||||||| ||||||||||||||| ||||||||||||    
T  38088696 tgcatgcccaaagctggattcgaacctggaaccttggttaagctagaagagacccgtttcatctcatctaa 38088626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 27763788 - 27763714
Alignment:
Q  1 cactgatgcatgcccaaggctggatttgaacccagagccttggttaagttagaagagacccgttccatctcatctaa 77  Q
    ||||| || ||||||||||||||||| ||||||||  ||||||||||| |||  ||||||||||| |||||||||||    
T  27763788 cactgttgtatgcccaaggctggattcgaacccaggaccttggttaagctag--gagacccgttctatctcatctaa 27763714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 77
Target Start/End: Original strand, 46604661 - 46604710
Alignment:
Q  28 gaacccagagccttggttaagttagaagagacccgttccatctcatctaa 77  Q
    ||||||||| |||||||||||||| ||||||| |||||||||||||||||    
T  46604661 gaacccagaaccttggttaagttataagagactcgttccatctcatctaa 46604710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 66
Target Start/End: Original strand, 48211040 - 48211099
Alignment:
Q  7 tgcatgcccaaggctggatttgaacccagagccttggttaagttagaagagacccgttcc 66  Q
    ||||||| |||||||||||| ||||| | | ||||| |||||||||||||||||||||||    
T  48211040 tgcatgctcaaggctggattcgaaccaaaaaccttgattaagttagaagagacccgttcc 48211099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 23 - 77
Target Start/End: Complemental strand, 25224744 - 25224690
Alignment:
Q  23 gatttgaacccagagccttggttaagttagaagagacccgttccatctcatctaa 77  Q
    |||| ||||||||  ||||||||||| ||||||||||||||| ||||||||||||    
T  25224744 gattcgaacccaggaccttggttaagctagaagagacccgtttcatctcatctaa 25224690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 77
Target Start/End: Complemental strand, 38331156 - 38331119
Alignment:
Q  40 ttggttaagttagaagagacccgttccatctcatctaa 77  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  38331156 ttggttaagttagaagagacccgatccatctcatctaa 38331119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 15283133 - 15283058
Alignment:
Q  7 tgcatgcccaaggctggatttgaacccagagccttggttaagttagaagagacccgttccatctcatctaaatgctctt 85  Q
    |||||||||| | ||||||| |||||||   |||| ||||||||||||||||| |||  ||||||||||||| ||||||    
T  15283133 tgcatgcccatgactggattcgaaccca---ccttagttaagttagaagagactcgtatcatctcatctaaacgctctt 15283058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 77
Target Start/End: Complemental strand, 14352616 - 14352545
Alignment:
Q  6 atgcatgcccaaggctggatttgaacccagagccttggttaagttagaagagacccgttccatctcatctaa 77  Q
    ||||||| ||||||||||||| ||||| |    |||||||||| ||||||||||  ||||||||||||||||    
T  14352616 atgcatgtccaaggctggattcgaaccgaatatcttggttaagctagaagagacttgttccatctcatctaa 14352545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 77
Target Start/End: Complemental strand, 42514669 - 42514595
Alignment:
Q  3 ctgatgcatgcccaaggctggatttgaacccagagccttggttaagttagaagagacccgttccatctcatctaa 77  Q
    ||||||||||||||| | |||||| |||||||   | || |||||| |||||||||| |||| ||||||||||||    
T  42514669 ctgatgcatgcccaaagttggattcgaacccaagactttagttaagctagaagagacacgtttcatctcatctaa 42514595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 84
Target Start/End: Original strand, 32344 - 32421
Alignment:
Q  7 tgcatgcccaaggctggatttgaacccagagccttggttaagttagaagagacccgttccatctcatctaaatgctct 84  Q
    ||||| ||||||  |||||| ||||||||| ||||||| ||| ||||||||||||||||||||| |||||||||||||    
T  32344 tgcatacccaagattggattcgaacccagaaccttggtgaagctagaagagacccgttccatcttatctaaatgctct 32421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 167914 - 167846
Alignment:
Q  7 tgcatgcccaaggctggatttgaacccagagccttggttaagttagaagagacccgttccatctcatctaa 77  Q
    ||||||||||||||||||||||||||| || ||||| ||||| ||||||||||||||| ||||||||||||    
T  167914 tgcatgcccaaggctggatttgaaccc-ga-ccttgattaagctagaagagacccgtttcatctcatctaa 167846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University