View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11282_high_11 (Length: 357)
Name: NF11282_high_11
Description: NF11282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11282_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 14 - 337
Target Start/End: Original strand, 2490266 - 2490587
Alignment:
| Q |
14 |
gtggttgggcgaggggcacataaaaaatcaaaatctgcaatatattgttttgatggcatatttgtgtgtacacaacaacaatcagaataccctgaaattc |
113 |
Q |
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||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2490266 |
gtggtggggcgaggggcacataaaaaatcaa--tttgcaatatattgttttgatggcatatttgtgtgtacacaacaacaatcagaataccctgaaattc |
2490363 |
T |
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| Q |
114 |
aatagtattttaagcacgtttaatcactatatcgttcatctttgattaccaggattatggttgtgctaccgtctgcagagaacaaagaaaatatattgag |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||| |
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| T |
2490364 |
catagtattttaagcacgtttaatcactatatcgttcatctttgattaccaggattatggttgggctaccgtccgcagagaacagagaaaatatattgag |
2490463 |
T |
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| Q |
214 |
gacccttttggctaaagagaaggtgcacgggggacttgattttaaggaactcgcaactatgactgaaggatatagtggaagtgatctgaaggtttttctc |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2490464 |
gacccttttggctaaagagaaggtgcacgggggacttgattttaaggaactcgcaactatgactgaaggatatagtggaagtgatctgaaggtttttctc |
2490563 |
T |
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| Q |
314 |
tattattgttttcctatgtccgta |
337 |
Q |
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|||||||||||||||||| ||||| |
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| T |
2490564 |
tattattgttttcctatggccgta |
2490587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 307
Target Start/End: Original strand, 45989453 - 45989493
Alignment:
| Q |
267 |
caactatgactgaaggatatagtggaagtgatctgaaggtt |
307 |
Q |
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| T |
45989453 |
caactatgacagaaggatatagtggaagtgatcttaaggtt |
45989493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 307
Target Start/End: Original strand, 44936073 - 44936113
Alignment:
| Q |
267 |
caactatgactgaaggatatagtggaagtgatctgaaggtt |
307 |
Q |
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| T |
44936073 |
caactatgacagaaggatatagcggaagtgatcttaaggtt |
44936113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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