View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11282_high_8 (Length: 381)

Name: NF11282_high_8
Description: NF11282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11282_high_8
NF11282_high_8
[»] chr3 (3 HSPs)
chr3 (1-371)||(34656717-34657088)
chr3 (308-365)||(43460266-43460323)
chr3 (309-357)||(55245680-55245728)
[»] chr5 (3 HSPs)
chr5 (307-372)||(38614615-38614680)
chr5 (307-360)||(3885460-3885513)
chr5 (309-365)||(5485290-5485346)
[»] chr4 (1 HSPs)
chr4 (309-354)||(44288563-44288608)
[»] chr1 (1 HSPs)
chr1 (309-361)||(17833437-17833489)
[»] chr6 (1 HSPs)
chr6 (328-365)||(4430888-4430925)


Alignment Details
Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Complemental strand, 34657088 - 34656717
Alignment:
Q  1 taccgaaatatactaatggggtaaatgttcagaaattgtatttcagactagaaaaggaactacagattctgacaattgnnnnnnn-ttggcttgttttct 99  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||    
T  34657088 taccgaaatatactaatggggtaaatgttcaaaaattgtatttcagactagaaaaggaactacagattctgacaattgaaaaaaaattggcttgttttct 34656989  T
Q  100 ggcaaggaaatacaacataattggtcaaagttggcacctacaccataatggtatcaagaacaaaaatatgatcatcccaaaaatctaaggttcagaaagt 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34656988 ggcaaggaaatacaacataattggtcaaagttggcacctacaccataatggtatcaagaacaaaaatatgatcatcccaaaaatctaaggttcagaaagt 34656889  T
Q  200 accgacaatcaatttttgaagttttactgcctcaagtacttttggtcagcatttaattatactctatagtggtcagcaaaatttaatatatttaaaacct 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  34656888 accgacaatcaatttttgaagttttactgcctcaagtacttttggtcagcatttaattatactctatagtggtcagcaaagtttaatatatttaaaacct 34656789  T
Q  300 tgaaccttaaccaacaatgcattggttcaagtggtaagggacttggaccccttaagcaagtggtcacaggtt 371  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  34656788 tgaaccttaaccaacaatgcattggttcaagtggtacgggacttggaccccttaagccagtggtcacaggtt 34656717  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 308 - 365
Target Start/End: Complemental strand, 43460323 - 43460266
Alignment:
Q  308 aaccaacaatgcattggttcaagtggtaagggacttggaccccttaagcaagtggtca 365  Q
    ||||||||||| |||||| |||||||||||||||||| |||||||||||| |||||||    
T  43460323 aaccaacaatggattggtccaagtggtaagggacttgaaccccttaagcatgtggtca 43460266  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 309 - 357
Target Start/End: Complemental strand, 55245728 - 55245680
Alignment:
Q  309 accaacaatgcattggttcaagtggtaagggacttggaccccttaagca 357  Q
    |||||||||| |||||| ||| ||||||||||||||| |||||||||||    
T  55245728 accaacaatggattggtccaaatggtaagggacttgggccccttaagca 55245680  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 307 - 372
Target Start/End: Complemental strand, 38614680 - 38614615
Alignment:
Q  307 taaccaacaatgcattggttcaagtggtaagggacttggaccccttaagcaagtggtcacaggttc 372  Q
    |||||||||||  |||||||||||||||||| ||||||||||||||||||| | ||||| ||||||    
T  38614680 taaccaacaatcgattggttcaagtggtaagtgacttggaccccttaagcatgcggtcaaaggttc 38614615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 307 - 360
Target Start/End: Original strand, 3885460 - 3885513
Alignment:
Q  307 taaccaacaatgcattggttcaagtggtaagggacttggaccccttaagcaagt 360  Q
    |||||||||||| ||||||||||||||||||  |||||||| ||||||||||||    
T  3885460 taaccaacaatggattggttcaagtggtaagaaacttggactccttaagcaagt 3885513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 309 - 365
Target Start/End: Original strand, 5485290 - 5485346
Alignment:
Q  309 accaacaatgcattggttcaagtggtaagggacttggaccccttaagcaagtggtca 365  Q
    ||||||| || ||||||||||||||||||||||||||   | |||||||||||||||    
T  5485290 accaacactggattggttcaagtggtaagggacttgggtgcgttaagcaagtggtca 5485346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 309 - 354
Target Start/End: Complemental strand, 44288608 - 44288563
Alignment:
Q  309 accaacaatgcattggttcaagtggtaagggacttggaccccttaa 354  Q
    |||||||||  |||||||||||||||||| ||||||||||||||||    
T  44288608 accaacaattgattggttcaagtggtaagagacttggaccccttaa 44288563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 309 - 361
Target Start/End: Original strand, 17833437 - 17833489
Alignment:
Q  309 accaacaatgcattggttcaagtggtaagggacttggaccccttaagcaagtg 361  Q
    |||||||||| |||  | |||||||||||||| ||||||||||||||||||||    
T  17833437 accaacaatggatttatccaagtggtaagggatttggaccccttaagcaagtg 17833489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 328 - 365
Target Start/End: Complemental strand, 4430925 - 4430888
Alignment:
Q  328 aagtggtaagggacttggaccccttaagcaagtggtca 365  Q
    ||||||||||||||| |||| |||||||||||||||||    
T  4430925 aagtggtaagggactcggacaccttaagcaagtggtca 4430888  T

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