View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11282_high_9 (Length: 373)
Name: NF11282_high_9
Description: NF11282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11282_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 20 - 370
Target Start/End: Original strand, 33531041 - 33531391
Alignment:
| Q |
20 |
ttaggagcttcaacaaggcttcagtttgtaaagcatagacctggtagacataaccannnnnnnaatcagcataagagggttattggccaatgagttgagt |
119 |
Q |
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| T |
33531041 |
ttaggagcttcaacaaggcttcagtttgtaaagcatagacctggtagacataaccatttttttaatcagcataagagggttattggccaatgagttgagt |
33531140 |
T |
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| Q |
120 |
aacatatgattnnnnnnnntgtaggagtgcctaaaataaaacatttaaccaaagaaactaacctttggagctgaatccacacctaaggatattgcagact |
219 |
Q |
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| T |
33531141 |
aacatatgattaaaaaaaatgtaggagtgcctaaaataaaacatttaaccaaagaaactaacctttggagctgaatccacacctaaggatattgcagact |
33531240 |
T |
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| Q |
220 |
gtgtttccttcaatataactttccaatccttgactttcctggcctcactgcatttgttaaagtgaacttgaagagcctgagcttggaaatcaagttccga |
319 |
Q |
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| T |
33531241 |
gtgtttccttcaatataactttccaatccttgactttcctggcctcactgcatttgttaaagtgaacttgaagagcctgagcttggaaatcaagttccga |
33531340 |
T |
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| Q |
320 |
atcaaagtacggagtttctttattgcagttcaatgccttctctgcttctcc |
370 |
Q |
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| T |
33531341 |
atcaaagtacggagtttctttattgcagttcaatgccttttctgcttctcc |
33531391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 169 - 313
Target Start/End: Original strand, 26209083 - 26209227
Alignment:
| Q |
169 |
caaagaaactaacctttggagctgaatccacacctaaggatattgcagactgtgtttccttcaatataactttccaatccttgactttcctggcctcact |
268 |
Q |
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| T |
26209083 |
caaaggaactaacctgtggagctgaatcggcacctaaggataatgcagactgtgtttcctttagtacaacactccattcattgaatttcctagcttctat |
26209182 |
T |
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| Q |
269 |
gcatttgttaaagtgaacttgaagagcctgagcttggaaatcaag |
313 |
Q |
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| T |
26209183 |
gcatttcttcaggtgattttgtagagcctgagcttgaaaagcaag |
26209227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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