View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11282_low_1 (Length: 638)
Name: NF11282_low_1
Description: NF11282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11282_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 195 - 622
Target Start/End: Complemental strand, 43172207 - 43171772
Alignment:
| Q |
195 |
caaaacaatgagtatcggccgcaacagagtagctcacacgaacatatat--gtatgacctggtagtaccagtaacaaacgacatgatatgtacacgtcat |
292 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
43172207 |
caaaacaatgagtatcggccgcaacagagtggctcacacgaacatatatatgtatgacctggtagtactagtaacaaacgacatgatatgtacacgtcat |
43172108 |
T |
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| Q |
293 |
cattgttttaaaagtactatgttcgtcaacgacataggaaaatagatagatccacaccacagtt-nnnnnnntaggttagttagtactaggaacttggat |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
43172107 |
cattgttttaaaagtactatgttcgtcaacgacataggaacatagatagatccacaccacagttaaaaaaaataggttagttagtactaggaacttggat |
43172008 |
T |
|
| Q |
392 |
cctcatcctcatgctctaag-nnnnnnnnggaaagatcctatcagtatttttatttctataggtataaaagaattaattatgtttggtac--aaaaaaac |
488 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
43172007 |
cctcatcctcatgctctaagtttttttttggaaagatcctatcagtatttttatttctataggtataaaagaattaattatgtttggtacaaaaaaaaac |
43171908 |
T |
|
| Q |
489 |
acc-nnnnnnnnnacaagttt-nnnnnnnnnncttaaaaaggtgaattcaccggagaagtaaacaaaacgtgtaccatgacaacnnnnnnngtgtaccat |
586 |
Q |
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| T |
43171907 |
accttttttttttacaagtttaaaaaaaaaaacttaaaaaggtgaattcaccggagaagtaaacaaaacgtgtaccatgacaacaaaaaaagtgtaccat |
43171808 |
T |
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| Q |
587 |
tatatatctaaattaaacaagattttgaataatttg |
622 |
Q |
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| T |
43171807 |
tatatatctaaattaaacaagattttgtataatttg |
43171772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 43172415 - 43172236
Alignment:
| Q |
1 |
gaaggtttgcaagaagaggaagttgaggccataattgagagatttcaccaatgaaaacagaatcttgatagatagatctaagtgcgttgtacaaactgtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43172415 |
gaaggtttgcaagaagaggaagttgaggccataattgagagatttcaccaatgaaaacagaatcttgatagatagatctaagtgcgttgtacaaactgtt |
43172316 |
T |
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| Q |
101 |
gtctcnnnnnnnaatgcttcttgctgctttgtatatgcttagcttcttcgaccattcttcctctgaaacctccatccaaa |
180 |
Q |
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| T |
43172315 |
gtctctttttttaatgcttcttgctgctttgtatatgcttagcttcttcgaccattcttcctctgaaacctccatccaaa |
43172236 |
T |
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