View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11282_low_13 (Length: 334)
Name: NF11282_low_13
Description: NF11282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11282_low_13 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 1e-90; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 162 - 334
Target Start/End: Complemental strand, 49685402 - 49685230
Alignment:
| Q |
162 |
tctaattgaaggtacttataaatttaatgctgatggatctcataataaagtcaatgttcaatcgccttgtggaggattactaagagatttcgtggagatt |
261 |
Q |
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| T |
49685402 |
tctaattgaaggtacttataaatttaatgctgatggatctcataataaagtcaatgttcaatcgccttgtggaggattactaagagatttcgtggagctt |
49685303 |
T |
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| Q |
262 |
tcatccaagatttttactgcaatcttggccgcaacaattctgtaactgctgagatatgggcattggtgcacac |
334 |
Q |
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| T |
49685302 |
tcatccaagatttttactgcaatcttggccgcaacaattctgtaactgctgagatatgggcattggtgcacac |
49685230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 81 - 162
Target Start/End: Complemental strand, 49685520 - 49685430
Alignment:
| Q |
81 |
ttcgagataattgacttccctttctaacaagtc---------tgattctccaattatggttaaaccttcaagatacatggaagaaaatagt |
162 |
Q |
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| T |
49685520 |
ttcgagataattgacttccctttctaacaagtcaagtgcagatgattgtccaaatatggttaaaccttcaagatacatggaagaaaatagt |
49685430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 49685560 - 49685520
Alignment:
| Q |
18 |
actattcctgctttgtggaaggatcggaatgaactaatatt |
58 |
Q |
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| T |
49685560 |
actaatcctgctatgtggaaggatcggaatgaactaatatt |
49685520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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