View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11282_low_14 (Length: 322)
Name: NF11282_low_14
Description: NF11282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11282_low_14 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 52863390 - 52863069
Alignment:
| Q |
1 |
aactgtaaatatcaccttcctttgttacttgtccagataacactgcttccggtgccacgtagcctaaagaaccaactggcgtcgttgttgaggacgacgc |
100 |
Q |
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| T |
52863390 |
aactgtaaatatcaccttcctttgttacttgtccagataacactgcttccggtgccacgtagcctaaagaaccaactggcgtcgttgttgaggacgacgc |
52863291 |
T |
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| Q |
101 |
agttgcttctattggactattaatcattgttaaccggtcaagcccaaattcagataaatgggcttcaaaatcagcatcgaaaagaacattttgtggctta |
200 |
Q |
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| T |
52863290 |
agttgtttctattggactattaatcattgttaaccggtcaagcccaaattcggataaatgggcttcaaaatcagcatcgaaaagaacattttgtggctta |
52863191 |
T |
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| Q |
201 |
acatcgccatgaacaatttccaccgagtgtaaataacccaagccacgagcaatacctaatgcaatcaaatgacgcattggccaattcaaaacatgaccat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52863190 |
acatcgccatgaacaatttccaccgagtgtaaataacccaagccacgagcaatacctaatgcaatcaaatgacgcattggccaattcaaaacatgaccat |
52863091 |
T |
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| Q |
301 |
cttgttgctaagcttcttgaag |
322 |
Q |
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||||||| ||||||||||||| |
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| T |
52863090 |
cttgttgtgaagcttcttgaag |
52863069 |
T |
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