View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11282_low_15 (Length: 321)
Name: NF11282_low_15
Description: NF11282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11282_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 52862982 - 52862670
Alignment:
| Q |
1 |
ctgttaagtttctatgcttaactttgcctaatgattctgcttctttgcggaatgtagcttcatccatcaatgttgatccatttggaagtctacgaattga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52862982 |
ctgttaagtttctatgcttaactttgcctaatgattctgcttctttgcggaatgtagcttcatccatcaatgttgatccatttggaagtctacgaattga |
52862883 |
T |
|
| Q |
101 |
tagaaccattccgtcttgatatgaggctttgaaaacaagtccatgttttcctctgcttaaaacgttttcttcatcaaagtttcttgttgcttctaatgtt |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52862882 |
tagaaccattccgtcttgatatgaggctttgaaaacaagtccatgttttcctctgcttaaaacgttttcttcatcaaagtttcttgttgcttctaatgtt |
52862783 |
T |
|
| Q |
201 |
tcagcatatgtgattttgttgttgaatactatgagttttggtcctccattttcaccacttcctctactgtttctttctccatttgagcctgcacttggac |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52862782 |
tcagcatatgtgattttgttgttgaatactatgagttttggtcctccattttcaccacttcctctactgtttctttctccatttgagcctgcacttggac |
52862683 |
T |
|
| Q |
301 |
tgcgtttcttctc |
313 |
Q |
| |
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||||||||||||| |
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| T |
52862682 |
tgcgtttcttctc |
52862670 |
T |
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