View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11282_low_18 (Length: 283)
Name: NF11282_low_18
Description: NF11282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11282_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 2884639 - 2884904
Alignment:
| Q |
1 |
caggtttgtaactgttactcaatttgctgaggcatttcaatcataccatgttggaaggaaaacaggagatgagcttgcaattccatttgacaagtctaag |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2884639 |
caggtttgtaactgttactcaatttgctgaggcatttcaatcataccatgttggaaggaaaacaggagatgagcttgcaattccatttgacaagtctaag |
2884738 |
T |
|
| Q |
101 |
aatcatccagcagcattaacaactaaaaagtatggtgttaacaagaaggaactattaaaggctaacttttcaagagagtatttgcttatgaaaagaaatt |
200 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
2884739 |
aatcatccagcagcattaacaactaaaaagtacggtgttaacaagaaagaactgttaaaggctaacttctcaagagagtatttgcttatgaaaagaaatt |
2884838 |
T |
|
| Q |
201 |
cctttgtttacatcttcaagatatgtcaggtaaatttctagtttctttacatgaatacatattttg |
266 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
2884839 |
cctttgtttacatcttcaagatatgtcaggtaaatttctagtttctttacatgaatatatattttg |
2884904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 2899921 - 2899686
Alignment:
| Q |
1 |
caggtttgtaactgttactcaatttgctgaggcatttcaatcataccatgttggaaggaaaacaggagatgagcttgcaattccatttgacaagtctaag |
100 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
2899921 |
caggtttttaactgttactcaatttgctgaggcatttcaatcataccatgttggaaggaaaacaagagatgagcttgcaattccatttgacaagtctaag |
2899822 |
T |
|
| Q |
101 |
aatcatccagcagcattaacaactaaaaagtatggtgttaacaagaaggaactattaaaggctaacttttcaagagagtatttgcttatgaaaagaaatt |
200 |
Q |
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|
|||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||| |||||||| ||||||||||||||||| |||| |
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| T |
2899821 |
aatcatccagcagcattaacaactaaaaagtacggtgttaacaagaaagaactgttaaaggctaacttctcaagagaatatttgcttatgaaaaggaatt |
2899722 |
T |
|
| Q |
201 |
cctttgtttacatcttcaagatatgtcaggtaaatt |
236 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
2899721 |
cctttgtttacatcttcaagatatgtcaggtaaatt |
2899686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 2 - 222
Target Start/End: Original strand, 2874772 - 2874992
Alignment:
| Q |
2 |
aggtttgtaactgttactcaatttgctgaggcatttcaatcataccatgttggaaggaaaacaggagatgagcttgcaattccatttgacaagtctaaga |
101 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||| | || | ||||||||| | || | ||| ||||||| |||||||||||||||||| || | |
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| T |
2874772 |
aggtttgtaacagttactcaatttgcagaggcattcaagtcgttccatgttgggaagacgatcaaagaagagcttgaaattccatttgacaagtcaaata |
2874871 |
T |
|
| Q |
102 |
atcatccagcagcattaacaactaaaaagtatggtgttaacaagaaggaactattaaaggctaacttttcaagagagtatttgcttatgaaaagaaattc |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||| |
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| T |
2874872 |
atcatccagcagcattaacaactaaaaagtatggtgttaacaagaaggaactattaaaggctaacatctcaagagagtttttgcttatgaaaagaaattc |
2874971 |
T |
|
| Q |
202 |
ctttgtttacatcttcaagat |
222 |
Q |
| |
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|| ||||| |||| ||||| |
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|
| T |
2874972 |
attcatttacctctttaagat |
2874992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 84; Significance: 6e-40; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 5 - 220
Target Start/End: Complemental strand, 44236101 - 44235886
Alignment:
| Q |
5 |
tttgtaactgttactcaatttgctgaggcatttcaatcataccatgttggaaggaaaacaggagatgagcttgcaattccatttgacaagtctaagaatc |
104 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||| | |||| |||| |||||| | || |||||| | | |||||||||||| | |||| | |
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| T |
44236101 |
tttgtaactgttactcaattcgctgaggcgtttcaatccttccatattggtaggaaacttgctgaggagctttccgtaccatttgacaagacgaagagcc |
44236002 |
T |
|
| Q |
105 |
atccagcagcattaacaactaaaaagtatggtgttaacaagaaggaactattaaaggctaacttttcaagagagtatttgcttatgaaaagaaattcctt |
204 |
Q |
| |
|
||||||| || || || || ||| |||||||| | ||||||| ||| || |||||||||||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
44236001 |
atccagctgctttgaccaccaaagagtatggtctcaacaagacggagcttttaaaggctaacttctcaagagagtatttgctcatgaaaagaaattcctt |
44235902 |
T |
|
| Q |
205 |
tgtttacatcttcaag |
220 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
44235901 |
tgtttacatcttcaag |
44235886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 7 - 220
Target Start/End: Complemental strand, 44213124 - 44212911
Alignment:
| Q |
7 |
tgtaactgttactcaatttgctgaggcatttcaatcataccatgttggaaggaaaacaggagatgagcttgcaattccatttgacaagtctaagaatcat |
106 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| |||| |||| ||||| | || |||||| | || |||||||||||| | |||| ||| |
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| T |
44213124 |
tgtaactgttactcaatttgccgaggcatttcaatcattccatattggtgggaaacttgctgaggagctttccataccatttgacaagacgaagagccat |
44213025 |
T |
|
| Q |
107 |
ccagcagcattaacaactaaaaagtatggtgttaacaagaaggaactattaaaggctaacttttcaagagagtatttgcttatgaaaagaaattcctttg |
206 |
Q |
| |
|
||||| || || || || ||| |||||||| | ||||||| ||| || |||||||||||||| ||||||||||||||||| |||||||| ||||| |||| |
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|
| T |
44213024 |
ccagctgctttgaccaccaaagagtatggtctcaacaagacggagcttttaaaggctaacttctcaagagagtatttgctcatgaaaaggaattcgtttg |
44212925 |
T |
|
| Q |
207 |
tttacatcttcaag |
220 |
Q |
| |
|
|||||||||||||| |
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|
| T |
44212924 |
tttacatcttcaag |
44212911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 5 - 220
Target Start/End: Complemental strand, 44225287 - 44225072
Alignment:
| Q |
5 |
tttgtaactgttactcaatttgctgaggcatttcaatcataccatgttggaaggaaaacaggagatgagcttgcaattccatttgacaagtctaagaatc |
104 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||| | |||| |||| |||||| | || |||||| | | |||||||||||| | |||| | |
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|
| T |
44225287 |
tttgtaactgttactcaattcgctgaggcgtttcaatccttccatattggtaggaaacttgctgaggagctttccgtaccatttgacaagacgaagagcc |
44225188 |
T |
|
| Q |
105 |
atccagcagcattaacaactaaaaagtatggtgttaacaagaaggaactattaaaggctaacttttcaagagagtatttgcttatgaaaagaaattcctt |
204 |
Q |
| |
|
||||||| || || || || ||| |||||||| | ||||||| ||| || |||||||||||||| ||||||||||||||||| |||||||| ||||| || |
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|
| T |
44225187 |
atccagctgctttgaccaccaaagagtatggtctcaacaagacggagcttttaaaggctaacttctcaagagagtatttgctcatgaaaaggaattcgtt |
44225088 |
T |
|
| Q |
205 |
tgtttacatcttcaag |
220 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
44225087 |
tgtttacatcttcaag |
44225072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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