View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11282_low_21 (Length: 249)

Name: NF11282_low_21
Description: NF11282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11282_low_21
NF11282_low_21
[»] chr4 (3 HSPs)
chr4 (1-237)||(2884331-2884567)
chr4 (70-239)||(2900466-2900635)
chr4 (81-239)||(2874335-2874493)
[»] chr2 (3 HSPs)
chr2 (87-237)||(44225341-44225491)
chr2 (87-237)||(44236155-44236305)
chr2 (87-237)||(44213180-44213330)
[»] chr8 (1 HSPs)
chr8 (143-225)||(4498067-4498149)
[»] chr7 (7 HSPs)
chr7 (113-239)||(39550630-39550756)
chr7 (122-239)||(39577239-39577356)
chr7 (113-225)||(39541372-39541484)
chr7 (125-239)||(39360866-39360980)
chr7 (113-239)||(39567423-39567549)
chr7 (125-214)||(39335082-39335171)
chr7 (166-239)||(42135603-42135676)


Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 2884567 - 2884331
Alignment:
Q  1 taaggtcatgtttcgataaacttatatatcttcatatagtgttcaccaaaaacttgaaagaatggactcaagatataaactttgacttacttcttgaaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2884567 taaggtcatgtttcgataaacttatatatcttcatatagtgttcaccaaaaacttgaaagaatggactcaagatataaactttgacttacttcttgaaga 2884468  T
Q  101 aagtcagctgcacctttcctctcaggacatttgaaaccaactgattcaaaaaattcaagaatatgttcgcgaggtccttggtagacaatttgaccatcag 200  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2884467 aagtccgctgcacctttcctctcaggacatttgaaaccaactgattcaaaaaattcaagaatatgttcgcgaggtccttggtagacaatttgaccatcag 2884368  T
Q  201 atataagaataatgtcatcaaaaagttcataagtctc 237  Q
    |||||||||||||||||||||||||||||||||||||    
T  2884367 atataagaataatgtcatcaaaaagttcataagtctc 2884331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 70 - 239
Target Start/End: Original strand, 2900466 - 2900635
Alignment:
Q  70 aagatataaactttgacttacttcttgaagaaagtcagctgcacctttcctctcaggacatttgaaaccaactgattcaaaaaattcaagaatatgttcg 169  Q
    |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||     
T  2900466 aagatataaactttgacttacttcttgaagaaagtcagctacccctttcctctcaggacatttgaaaccaactgattcaaaaaagtcaagaacatgttca 2900565  T
Q  170 cgaggtccttggtagacaatttgaccatcagatataagaataatgtcatcaaaaagttcataagtctctg 239  Q
    || |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  2900566 cgcggtccttgatagacaatttgaccatcggatataagaataatgtcatcaaaaagttcataagtctctg 2900635  T

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Target: chr4; HSP #3
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 81 - 239
Target Start/End: Complemental strand, 2874493 - 2874335
Alignment:
Q  81 tttgacttacttcttgaagaaagtcagctgcacctttcctctcaggacatttgaaaccaactgattcaaaaaattcaagaatatgttcgcgaggtccttg 180  Q
    ||||||||||||||||||| || |||||  | ||||||||||||||||||||||||||||  ||||||||||||||||||| || ||| |||||||||||    
T  2874493 tttgacttacttcttgaaggaaatcagcaacgcctttcctctcaggacatttgaaaccaatagattcaaaaaattcaagaacattttcacgaggtccttg 2874394  T
Q  181 gtagacaatttgaccatcagatataagaataatgtcatcaaaaagttcataagtctctg 239  Q
    ||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  2874393 gtaaacaatttcaccatcagataaaagaataatgtcatcaaaaagttcataagtctctg 2874335  T

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Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 87 - 237
Target Start/End: Original strand, 44225341 - 44225491
Alignment:
Q  87 ttacttcttgaagaaagtcagctgcacctttcctctcaggacatttgaaaccaactgattcaaaaaattcaagaatatgttcgcgaggtccttggtagac 186  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||||||||| | || ||||||||| ||||||| || |||||| || || ||||| ||    
T  44225341 ttacttcttgaagaaagtcagcagcacctttcctttcaggacatttgaaacccattgtttcaaaaaagtcaagaacatattcgcgggggccatggtatac 44225440  T
Q  187 aatttgaccatcagatataagaataatgtcatcaaaaagttcataagtctc 237  Q
    || ||| |||||||| || |  ||||||||||||||||| |||||||||||    
T  44225441 aacttggccatcagaaattaagataatgtcatcaaaaagatcataagtctc 44225491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 87 - 237
Target Start/End: Original strand, 44236155 - 44236305
Alignment:
Q  87 ttacttcttgaagaaagtcagctgcacctttcctctcaggacatttgaaaccaactgattcaaaaaattcaagaatatgttcgcgaggtccttggtagac 186  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||||||||| | || ||||||||| ||||||| || |||||| || || ||||| ||    
T  44236155 ttacttcttgaagaaagtcagcggcacctttcctttcaggacatttgaaacccattgtttcaaaaaagtcaagaacatattcgcgggggccatggtatac 44236254  T
Q  187 aatttgaccatcagatataagaataatgtcatcaaaaagttcataagtctc 237  Q
    || ||| |||||||| || |  ||||||||||||||||| |||||||||||    
T  44236255 aacttggccatcagagattaagataatgtcatcaaaaagatcataagtctc 44236305  T

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Target: chr2; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 87 - 237
Target Start/End: Original strand, 44213180 - 44213330
Alignment:
Q  87 ttacttcttgaagaaagtcagctgcacctttcctctcaggacatttgaaaccaactgattcaaaaaattcaagaatatgttcgcgaggtccttggtagac 186  Q
    |||||||||||||||| |||||  |||||||||| ||||||||||||||||| |  ||||| ||||| ||||||| || |||||| || || ||||| ||    
T  44213180 ttacttcttgaagaaaatcagcaacacctttcctttcaggacatttgaaacccatagattcgaaaaagtcaagaacatattcgcgggggccatggtatac 44213279  T
Q  187 aatttgaccatcagatataagaataatgtcatcaaaaagttcataagtctc 237  Q
    || ||| ||||||||||| |  ||||||||||||||||| |||||||||||    
T  44213280 aacttggccatcagatattaagataatgtcatcaaaaagatcataagtctc 44213330  T

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Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 143 - 225
Target Start/End: Complemental strand, 4498149 - 4498067
Alignment:
Q  143 gattcaaaaaattcaagaatatgttcgcgaggtccttggtagacaatttgaccatcagatataagaataatgtcatcaaaaag 225  Q
    |||||||| ||||||| ||| ||||| || || |||||||| |||| |||||| |||||||||||||||||||||||||||||    
T  4498149 gattcaaagaattcaacaatgtgttcacgtggaccttggtacacaacttgaccctcagatataagaataatgtcatcaaaaag 4498067  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 113 - 239
Target Start/End: Original strand, 39550630 - 39550756
Alignment:
Q  113 cctttcctctcaggacatttgaaaccaactgattcaaaaaattcaagaatatgttcgcgaggtccttggtagacaatttgaccatcagatataagaataa 212  Q
    |||||||| ||||||||||| ||||||| |||||| ||||||||||| |  || || || || |||||||| | ||| |||| |||||| |  |||||||    
T  39550630 cctttcctatcaggacatttaaaaccaattgattcgaaaaattcaagcacgtgctcacggggaccttggtatataatgtgactatcagagagtagaataa 39550729  T
Q  213 tgtcatcaaaaagttcataagtctctg 239  Q
    |||| |||||||| |  ||||||||||    
T  39550730 tgtcgtcaaaaagattgtaagtctctg 39550756  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 122 - 239
Target Start/End: Original strand, 39577239 - 39577356
Alignment:
Q  122 tcaggacatttgaaaccaactgattcaaaaaattcaagaatatgttcgcgaggtccttggtagacaatttgaccatcagatataagaataatgtcatcaa 221  Q
    |||||||| |||||||| | |||  ||||||||||||| |  ||||| | ||| || ||||| ||||| || || ||||| |  ||||||||||| ||||    
T  39577239 tcaggacacttgaaacctaatgaagcaaaaaattcaagcacgtgttcacaaggaccctggtacacaatgtgcccctcagagagtagaataatgtcgtcaa 39577338  T
Q  222 aaagttcataagtctctg 239  Q
    |||| |||||||||||||    
T  39577339 aaagatcataagtctctg 39577356  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 225
Target Start/End: Original strand, 39541372 - 39541484
Alignment:
Q  113 cctttcctctcaggacatttgaaaccaactgattcaaaaaattcaagaatatgttcgcgaggtccttggtagacaatttgaccatcagatataagaataa 212  Q
    |||||||| ||||||||||| ||||| | |||||| ||||||||||| |  || || || || |||||||| | ||| |||| |||||| |  |||||||    
T  39541372 cctttcctatcaggacatttaaaaccgattgattcgaaaaattcaagcacgtgctcacggggaccttggtatataatgtgactatcagagagtagaataa 39541471  T
Q  213 tgtcatcaaaaag 225  Q
    | |||||||||||    
T  39541472 tttcatcaaaaag 39541484  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 239
Target Start/End: Complemental strand, 39360980 - 39360866
Alignment:
Q  125 ggacatttgaaaccaactgattcaaaaaattcaagaatatgttcgcgaggtccttggtagacaatttgaccatcagatataagaataatgtcatcaaaaa 224  Q
    |||||||| ||||||| |||||| ||||||||||| |  ||||| || || |||||||| | ||| |||| |||||| |  || |||||||| |||||||    
T  39360980 ggacatttaaaaccaattgattcgaaaaattcaagcacgtgttcccggggaccttggtaaataatgtgactatcagagagtagtataatgtcgtcaaaaa 39360881  T
Q  225 gttcataagtctctg 239  Q
    | |  ||||||||||    
T  39360880 gattgtaagtctctg 39360866  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 239
Target Start/End: Original strand, 39567423 - 39567549
Alignment:
Q  113 cctttcctctcaggacatttgaaaccaactgattcaaaaaattcaagaatatgttcgcgaggtccttggtagacaatttgaccatcagatataagaataa 212  Q
    |||||||| || |||||||| ||||| | |||||||||||||||||| |  ||||| || || |||||||| | |||  ||| |||||| |  |||||||    
T  39567423 cctttcctatctggacatttaaaaccgattgattcaaaaaattcaagtacgtgttcccggggaccttggtatataatgcgactatcagagagtagaataa 39567522  T
Q  213 tgtcatcaaaaagttcataagtctctg 239  Q
     ||| |||||||| |  ||||||||||    
T  39567523 cgtcgtcaaaaagattgtaagtctctg 39567549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 214
Target Start/End: Complemental strand, 39335171 - 39335082
Alignment:
Q  125 ggacatttgaaaccaactgattcaaaaaattcaagaatatgttcgcgaggtccttggtagacaatttgaccatcagatataagaataatg 214  Q
    |||||||| ||||||| |||||| ||||||||||| |  ||||| ||||| |||||||| | ||| |||| |||||| |  |||||||||    
T  39335171 ggacatttaaaaccaattgattcgaaaaattcaagcacgtgttcccgaggaccttggtatataatatgactatcagagagtagaataatg 39335082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 239
Target Start/End: Original strand, 42135603 - 42135676
Alignment:
Q  166 ttcgcgaggtccttggtagacaatttgaccatcagatataagaataatgtcatcaaaaagttcataagtctctg 239  Q
    |||||| ||||||||||| ||||||||||| || || |  || |||||||||||||| |||||| | |||||||    
T  42135603 ttcgcgtggtccttggtatacaatttgaccttctgaaagtaggataatgtcatcaaagagttcaaatgtctctg 42135676  T

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