View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11282_low_22 (Length: 243)
Name: NF11282_low_22
Description: NF11282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11282_low_22 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 13 - 225
Target Start/End: Complemental strand, 44232691 - 44232475
Alignment:
| Q |
13 |
cagagagtcacctatagccacctttcctattatcctcgatcttagatgaacg----tatcgagagttgagacatctcaagactttggatgaacgtgtaag |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44232691 |
cagagagtcacctatagccacctttcctattatcctcgatcttagatgaacgaacgtatctagagttgagacatctcaagactttggatgaacgtgtaag |
44232592 |
T |
|
| Q |
109 |
gacaggacaaatgtgttctagagatagtgcatctgattatttgttgtgtaagatggaagtgcacatagttgactgtgttaacaagttattgtaatatcat |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44232591 |
gacaggacaaatgtgttctagagatagtgcatctgattatttgttgtgtaagatggaagtgcacatagttgactgtgttaacaagttattgtaatatcat |
44232492 |
T |
|
| Q |
209 |
ttgaaaatggaagtaca |
225 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
44232491 |
ttgaaaatggaagtaca |
44232475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 214
Target Start/End: Complemental strand, 44232485 - 44232432
Alignment:
| Q |
161 |
atggaagtgcacatagttgactgtgttaacaagttattgtaatatcatttgaaa |
214 |
Q |
| |
|
|||||||| |||||| |||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
44232485 |
atggaagtacacatatttgactgtgttagcaagttattgcgatatcatttgaaa |
44232432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University