View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11282_low_3 (Length: 592)
Name: NF11282_low_3
Description: NF11282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11282_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 495; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 1 - 582
Target Start/End: Complemental strand, 48570106 - 48569526
Alignment:
| Q |
1 |
cttccacgtggcctctctacccggatttgcccccaccggcaatcccaaatattttaacggaagtctcccttcactaaaattcaaaaaggttacaatgctt |
100 |
Q |
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| T |
48570106 |
cttccatgtggcctctctacccggatttgcccccaccagcaatcccaaatatttaaatggaagtctcccttcactaaaattcaaaaaggttacgatgctt |
48570007 |
T |
|
| Q |
101 |
atttcaagtaaaatatttcgccaactaagattgagctagcgatagggttagactctcgcaacatgacaaactcaagtttgaatactagttatagttaaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48570006 |
atttcaagtaaaatatttcgccaactaagattgagctagcgatagggttagactctcgcaacatgacaaactcaagtttgaatactagttatagttaaga |
48569907 |
T |
|
| Q |
201 |
gaggtatctacatgttgcgatccgacacaacttgaataggattacctcatatggaggatcctctagaaaaccaaaactatatattttacatcagtataat |
300 |
Q |
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| T |
48569906 |
gaggtatctacatgttgcgatccgacacaacttgaataggattacctcatatggaggatcctctagaaaaccaaaactatatattttacaacagtataat |
48569807 |
T |
|
| Q |
301 |
agccgcactgcacatggcaacttattacaagataactatgggagagnnnnnnnctgatgacgtgcagaagatagccttccaacatccactaaatcatata |
400 |
Q |
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| T |
48569806 |
agccgcactgcacatggcaacttattacgagataactatgggagagaaaaaaactgatgacgtgcagaagatagccttccaacatccactaaatcatata |
48569707 |
T |
|
| Q |
401 |
caagcctccagaatttgcgtttaatnnnnnnncatattgttgagctcataaacctgcattcatgttcttgatgtaattaaataaactcatttgaaataca |
500 |
Q |
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| T |
48569706 |
caagcctccagaatttgcgtttaat-aaaaaacattttgttgagctcataaacctgcattcatgttcttgatgtaattaaataaactcatttgaaataca |
48569608 |
T |
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| Q |
501 |
tttaactaaacagccgtcatcagctaatgataattttgttaaaaaagtctgcctgctcgggaaaatactccatcaattcatc |
582 |
Q |
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| T |
48569607 |
tttaaccaaacagccgtcatcagccaatgataattttgttaaaaaagtctgcctgctcgggaaaatactccatcaattcatc |
48569526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 516 - 582
Target Start/End: Complemental strand, 36145966 - 36145900
Alignment:
| Q |
516 |
gtcatcagctaatgataattttgttaaaaaagtctgcctgctcgggaaaatactccatcaattcatc |
582 |
Q |
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| T |
36145966 |
gtcatcagctaatgatcattttgtttaaaaactcagcttgctcaggaaaatactccatcaattcatc |
36145900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 516 - 582
Target Start/End: Original strand, 10821422 - 10821488
Alignment:
| Q |
516 |
gtcatcagctaatgataattttgttaaaaaagtctgcctgctcgggaaaatactccatcaattcatc |
582 |
Q |
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| T |
10821422 |
gtcatcagctaatgatcattttgtttaaaaactcagcttgctctggaaaatactcaatcaattcatc |
10821488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 13853148 - 13853082
Alignment:
| Q |
22 |
cggatttgcccccaccggcaatcccaaatattttaacggaagtctcccttcactaaaattcaaaaag |
88 |
Q |
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| T |
13853148 |
cggattagcccccaccggtaatcccaaatacttaaatggaagcctcccttgactacaattcaaaaag |
13853082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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