View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11282_low_4 (Length: 473)
Name: NF11282_low_4
Description: NF11282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11282_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 17 - 237
Target Start/End: Original strand, 46441658 - 46441878
Alignment:
| Q |
17 |
cagacagctagttgatgatagaaccatctttatgacattttccaaagattgtccggtttatgagaatgaacttagagaattttttacgaggtaccatttt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
46441658 |
cagacagctagttgatgatagaaccatctttatgacattttccaaagattgtccggtttatgagaatgaacttagggaattttttacgaggtaccatttt |
46441757 |
T |
|
| Q |
117 |
agatttatttatttatgtccatattcatgtacatatatcaaatttcttaattatataaaactttacttatttaattaataatcattatcacatcttacga |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
46441758 |
agatttatttatttatgtccatattcatgtacatatatcaaatttcttaattatataaaattttaattatttaattaataatcattatcacatcttacga |
46441857 |
T |
|
| Q |
217 |
aagttgactctatgtgtttca |
237 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
46441858 |
aagttgactctatgtgtttca |
46441878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 307 - 455
Target Start/End: Original strand, 46441948 - 46442096
Alignment:
| Q |
307 |
cctatcgaaacaggaaatttggaaatatcattgacaatctaatcatgcaagaagcgaattcaccggagcaatcaatgtatgctcgtcttgtagttcgtcg |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46441948 |
cctatcgaaacaggaaatttggaaatatcattgacaatctaatcatgcaagaagcgaattcaccggagcaatcaatgtatgctcgtcttgtagttcgtcg |
46442047 |
T |
|
| Q |
407 |
tgaggctgtagatatggttgatcatttccttgaccataatccaagaatg |
455 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
46442048 |
tgaggctgtagatatggttgatcgtttccttgacgataatccaagaatg |
46442096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 314 - 455
Target Start/End: Complemental strand, 18329767 - 18329626
Alignment:
| Q |
314 |
aaacaggaaatttggaaatatcattgacaatctaatcatgcaagaagcgaattcaccggagcaatcaatgtatgctcgtcttgtagttcgtcgtgaggct |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||| || || |||||||||| |||| |||| |||||||| |||||||||||||||| ||||||| ||||||| |
|
|
| T |
18329767 |
aaacaggaaatttggaaatatcattgacaacctgataatgcaagaagtgaatccaccaaagcaatcattgtatgctcgtcttgttgttcgtcctgaggct |
18329668 |
T |
|
| Q |
414 |
gtagatatggttgatcatttccttgaccataatccaagaatg |
455 |
Q |
| |
|
| ||| | ||||||||||||||||| | ||| |||||||| |
|
|
| T |
18329667 |
atggatgtaattgatcatttccttgactacaattcaagaatg |
18329626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 22 - 122
Target Start/End: Complemental strand, 18331057 - 18330957
Alignment:
| Q |
22 |
agctagttgatgatagaaccatctttatgacattttccaaagattgtccggtttatgagaatgaacttagagaattttttacgaggtaccattttagatt |
121 |
Q |
| |
|
|||||||||||||||| ||| |||| ||||||||||| |||| | ||| ||| |||||||||| |||||||||| || || ||||| |||||| |||| |
|
|
| T |
18331057 |
agctagttgatgataggaccctcttcatgacattttctaaaggctatcctatttctgagaatgaaattagagaattcttcacaaggtatcatttttgatt |
18330958 |
T |
|
| Q |
122 |
t |
122 |
Q |
| |
|
| |
|
|
| T |
18330957 |
t |
18330957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University