View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11283_high_12 (Length: 228)
Name: NF11283_high_12
Description: NF11283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11283_high_12 |
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| [»] chr6 (5 HSPs) |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 125; Significance: 2e-64; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 19 - 228
Target Start/End: Complemental strand, 27606774 - 27606559
Alignment:
| Q |
19 |
gtataagaatttcacactatcctatcagtaatttcct---tttctttaactatgaactaagcattcatttcttcttttacagttcattaacataaatcta |
115 |
Q |
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| T |
27606774 |
gtataagaatttcacactgtcctatcagtaattttgcaactttctttaactgtgaactaagcattcatttcttcttttacaggtcaataacagaaattca |
27606675 |
T |
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| Q |
116 |
tctgtagt---ctggcttttttgcattgtcatacgagatgttttgagtatgaattgaacattgcacatgatccttctgcaaa-tcgacatatttcctttc |
211 |
Q |
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| T |
27606674 |
tctgtagttgtctggcttttt-gcattgtcatacgaaatgttttgagtatgaattgaacattgcacatgatccttctgcaaactcgacatatttcctttc |
27606576 |
T |
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| Q |
212 |
ttgttatccatgcctgc |
228 |
Q |
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| T |
27606575 |
gtgttatccatgcctgc |
27606559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 54 - 145
Target Start/End: Complemental strand, 27419060 - 27418967
Alignment:
| Q |
54 |
cttttctttaactatgaactaagcattcatttcttcttttacagttcattaacataaatctatc---tgtagtctggcttttttgcattgtcata |
145 |
Q |
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| T |
27419060 |
cttttctctaactatgacctaagcattcatttcttcttttacagttcattaccagaaatccatcgattgttgtctggc-tttttgcattgtcata |
27418967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 54 - 153
Target Start/End: Complemental strand, 27712813 - 27712712
Alignment:
| Q |
54 |
cttttctttaactatgaactaagcattcatttcttcttttacagttcattaacataaatctatct---gtagtctggcttttttgcattgtcatacgaga |
150 |
Q |
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| T |
27712813 |
cttttctctaactattaactaagcatccatttcttcttttattgtacattgacaaaaaaccatctatagttgtctggc-tttttgcattgtcatacgaga |
27712715 |
T |
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| Q |
151 |
tgt |
153 |
Q |
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||| |
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| T |
27712714 |
tgt |
27712712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 160 - 210
Target Start/End: Complemental strand, 27712610 - 27712560
Alignment:
| Q |
160 |
tatgaattgaacattgcacatgatccttctgcaaatcgacatatttccttt |
210 |
Q |
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| T |
27712610 |
tatgaattgaacattgcacatgatccttatgcagctcgacatatttgcttt |
27712560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 192
Target Start/End: Original strand, 19413202 - 19413235
Alignment:
| Q |
159 |
gtatgaattgaacattgcacatgatccttctgca |
192 |
Q |
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| T |
19413202 |
gtatgaattgaaaattgcacatgatccttctgca |
19413235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 54 - 145
Target Start/End: Original strand, 68303 - 68396
Alignment:
| Q |
54 |
cttttctttaactatgaactaagcattcatttcttcttttacagttcattaacataaatctatc---tgtagtctggcttttttgcattgtcata |
145 |
Q |
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| T |
68303 |
cttttctctaactatgacctaagcattcatttcttcttttacagttcattaccagaaatccatcgattgttgtctggc-tttttgcattgtcata |
68396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 61 - 153
Target Start/End: Original strand, 5083097 - 5083191
Alignment:
| Q |
61 |
ttaactatgaactaagcattcatttcttcttttacagttcattaacataaatctatctgta---gtctggcttttttgcattgtcatacgagatgt |
153 |
Q |
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| T |
5083097 |
ttaactataaactaagcattcatttcttcttttactgtacattgacagaaaaccatctgtagttgtctggc-tttttgcattgtcatacgagatgt |
5083191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 224
Target Start/End: Original strand, 5083292 - 5083357
Alignment:
| Q |
159 |
gtatgaattgaacattgcacatgatccttctgcaaatcgacatatttcctttcttgttatccatgc |
224 |
Q |
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| T |
5083292 |
gtatgagttgaacattgcacatgatccttctgcagctcgacgtatattctttcgtgctatccatgc |
5083357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 227
Target Start/End: Original strand, 26141402 - 26141460
Alignment:
| Q |
169 |
aacattgcacatgatccttctgcaaatcgacatatttcctttcttgttatccatgcctg |
227 |
Q |
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| T |
26141402 |
aacattgcacacgatccttctgcaatccgacatattttctttcgtgctatccatccctg |
26141460 |
T |
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