View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11283_high_4 (Length: 451)
Name: NF11283_high_4
Description: NF11283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11283_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 11 - 436
Target Start/End: Original strand, 187827 - 188252
Alignment:
| Q |
11 |
gaagaagttaagttcaagatgtacaacagggcttgtttgtattggtggtttcggatcccccaatggcgatggtcttgccttctttaatattggcagaagc |
110 |
Q |
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| T |
187827 |
gaagaagttaagttcaagatgtacaacagggcttgtttgtattggtggtttcggatcccccaatggcgatggtcttgccttctttaatattggcagcagc |
187926 |
T |
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| Q |
111 |
agcaggttcattggcggtagacaaggacttcttgctgattatgcggtaaatctctccaagggttgtctgaaaagccttctcgacgttggtggcttcaaga |
210 |
Q |
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| T |
187927 |
agcaggttcattggcggtagacaaggacttcttgctgattatgcggtaaatctctccaagggttgtctgaaaagccttctcgacgttggtggcttcaaga |
188026 |
T |
|
| Q |
211 |
gcagatgtctcaatgaaagaaagaccttccttttcagcatagctctgggcatcctcagtggcaacagcacggagatgcttgagatcggttttgttgccaa |
310 |
Q |
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| T |
188027 |
gcagatgtctcaatgaaagaaaggccttccttttcagcatagctctgggcatcctcagtggcaacagcacggagatgcttgagatcggttttgttgccaa |
188126 |
T |
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| Q |
311 |
ttaacatgataacaatgttagcatcggcatggtccctgagttcctttagccatctggtgacattgtcaaaggtagtgggtttggttacatcatagacaag |
410 |
Q |
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| T |
188127 |
ttaacatgataacaatgttagcatcggcatggtccctgagttcctttagccatctagtgacattgtcaaaggtagtgggtttggttacatcatagacaag |
188226 |
T |
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| Q |
411 |
aagagcaccgagggcaccgcgatagt |
436 |
Q |
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|||||||||||||||||||||||||| |
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| T |
188227 |
aagagcaccgagggcaccgcgatagt |
188252 |
T |
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